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1
reply
11k
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Comment:
C: Why can't use t-test for differential expression (negative binomial distribution
5.6 years ago by
CY
▴ 750
2
votes
12
replies
2.5k
views
Multiple testing correction issue
multiple testing correction
updated 5.6 years ago by
swbarnes2
14k • written 5.6 years ago by
CY
▴ 750
0
votes
2
replies
2.5k
views
Comment:
C: Multiple testing correction issue
5.6 years ago by
CY
▴ 750
0
votes
0
replies
2.5k
views
Comment:
C: Multiple testing correction issue
5.6 years ago by
CY
▴ 750
0
votes
2
replies
2.5k
views
Comment:
C: Multiple testing correction issue
5.6 years ago by
CY
▴ 750
0
votes
1
reply
2.5k
views
Comment:
C: Multiple testing correction issue
5.6 years ago by
CY
▴ 750
0
votes
1
reply
1.3k
views
Tools that make mutation based phylogenetic tree figure
phylogenetic
heterogeneity
5.7 years ago by
CY
▴ 750
0
votes
0
replies
897
views
intuitive explaination of using HMM for alignment
HMM
alignment
5.7 years ago by
CY
▴ 750
1
vote
1
reply
1.4k
views
Capturing TCR from cfDNA
TCR
cfDNA
ctDNA
5.7 years ago by
CY
▴ 750
0
votes
0
replies
1.6k
views
TCR-Seq from bulk RNA-Seq data using TRUST
TCR-Seq
RNA-Seq
TRUST
5.8 years ago by
CY
▴ 750
0
votes
0
replies
1.2k
views
Does it make sense to use methylation data for GESA
GESA
methylation
expression
5.8 years ago by
CY
▴ 750
0
votes
1
reply
1.9k
views
Comment:
C: Can we get absolute abundance of TCR using TCR-Seq?
5.8 years ago by
CY
▴ 750
0
votes
1
reply
1.9k
views
Comment:
C: Can we get absolute abundance of TCR using TCR-Seq?
5.8 years ago by
CY
▴ 750
0
votes
0
replies
836
views
Question regarding deFuse and fusion calling
RNA-Seq
fusion
deFuse
5.8 years ago by
CY
▴ 750
0
votes
0
replies
1.1k
views
Why can't solve tumor clonality using simple EM (Gaussian mixture) instead of MCMC(PyClone) or variational Bayes (SciClone)?
Clonality
PyClone
SciClone
5.9 years ago by
CY
▴ 750
0
votes
0
replies
2.7k
views
Comment:
C: Is linearity maintained in linear regression of RNA-Seq?
6.0 years ago by
CY
▴ 750
0
votes
1
reply
2.7k
views
Comment:
C: Is linearity maintained in linear regression of RNA-Seq?
6.0 years ago by
CY
▴ 750
4
votes
5
replies
2.7k
views
Is linearity maintained in linear regression of RNA-Seq?
RNA-Seq
updated 16 months ago by
Kevin Blighe
88k • written 6.0 years ago by
CY
▴ 750
0
votes
1
reply
22k
views
Comment:
C: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
6.0 years ago by
CY
▴ 750
0
votes
0
replies
7.3k
views
Comment:
C: Log-transformed RNA-Seq data and linear regression
6.0 years ago by
CY
▴ 750
0
votes
0
replies
7.3k
views
Comment:
C: Log-transformed RNA-Seq data and linear regression
6.0 years ago by
CY
▴ 750
0
votes
0
replies
1.1k
views
Any method to solve RNA-Seq's non-linearity problem for deconvoluting immune cell?
RNA-Seq
deconvolution
6.0 years ago by
CY
▴ 750
3
votes
2
replies
2.1k
views
Somatic variant caller
next-gen
variant calling
somatic
updated 6.0 years ago by
Biostar
20 • written 7.7 years ago by
CY
▴ 750
3
votes
6
replies
1.1k
views
Transcriptomic profile fluctuation between different time point
RNA-Seq
updated 6.0 years ago by
Biostar
20 • written 6.1 years ago by
CY
▴ 750
0
votes
2
replies
4.1k
views
Comment:
C: Why use LASSO / elastic net in survival regression?
6.0 years ago by
CY
▴ 750
2
votes
6
replies
4.1k
views
Why use LASSO / elastic net in survival regression?
survival analysis
LASSO
updated 6.0 years ago by
Jean-Karim Heriche
27k • written 6.0 years ago by
CY
▴ 750
0
votes
0
replies
1.2k
views
Any tools for co-mutation analysis just like WGCNA on co-expression analysis
Mutation
Expression
6.0 years ago by
CY
▴ 750
0
votes
0
replies
631
views
Forum:
Have TCGA yielded expected research value yet?
TCGA
updated 18 months ago by
Ram
44k • written 6.0 years ago by
CY
▴ 750
50
votes
9
replies
19k
views
7 follow
why PCA for RNA-Seq but tSNE for scRNA-seq?
pca
RNA-Seq
tSNE
scRNA-seq
updated 6.0 years ago by
Min Dai
▴ 160 • written 6.6 years ago by
CY
▴ 750
0
votes
1
reply
993
views
Comment:
C: Can remote, but same type, tissue be used as RNA-Seq normal control for tumor st
6.1 years ago by
CY
▴ 750
0
votes
3
replies
993
views
Can remote, but same type, tissue be used as RNA-Seq normal control for tumor study?
RNA-Seq
updated 6.1 years ago by
Kristoffer Vitting-Seerup
★ 4.1k • written 6.1 years ago by
CY
▴ 750
0
votes
1
reply
4.7k
views
Comment:
C: Why NMF for mutation signature analysis
6.1 years ago by
CY
▴ 750
13
votes
8
replies
4.7k
views
Why NMF for mutation signature analysis
mutation
NMF
signature
6.1 years ago by
CY
▴ 750
0
votes
1
reply
4.7k
views
Comment:
C: Why NMF for mutation signature analysis
6.1 years ago by
CY
▴ 750
0
votes
0
replies
4.7k
views
Comment:
C: Why NMF for mutation signature analysis
6.1 years ago by
CY
▴ 750
0
votes
0
replies
1.1k
views
Comment:
C: Transcriptomic profile fluctuation between different time point
6.1 years ago by
CY
▴ 750
1
vote
0
replies
1.1k
views
Comment:
C: Transcriptomic profile fluctuation between different time point
6.1 years ago by
CY
▴ 750
0
votes
1
reply
1.1k
views
Comment:
C: Transcriptomic profile fluctuation between different time point
6.1 years ago by
CY
▴ 750
0
votes
1
reply
1.3k
views
Comment:
C: Gene expression distribution (non-DE and DE)
6.1 years ago by
CY
▴ 750
0
votes
1
reply
1.3k
views
Comment:
C: Gene expression distribution (non-DE and DE)
6.1 years ago by
CY
▴ 750
2
votes
5
replies
1.3k
views
Gene expression distribution (non-DE and DE)
RNA-Seq
differential expression
updated 6.1 years ago by
Kevin Blighe
88k • written 6.1 years ago by
CY
▴ 750
1
vote
0
replies
4.4k
views
Shannon index vs Simpson index in evaluating TCR diversity
TCR-Seq
TCR diversity
6.1 years ago by
CY
▴ 750
0
votes
0
replies
4.6k
views
Answer:
A: Correcting for tumor purity in tumor evolution analysis
6.2 years ago by
CY
▴ 750
0
votes
1
reply
1.6k
views
Comment:
C: Low VAF (around 7%) mutated gene prevalent in cancer patient (3/4), driver?
6.2 years ago by
CY
▴ 750
0
votes
1
reply
1.6k
views
Comment:
C: Low VAF (around 7%) mutated gene prevalent in cancer patient (3/4), driver?
6.2 years ago by
CY
▴ 750
3
votes
5
replies
1.6k
views
Low VAF (around 7%) mutated gene prevalent in cancer patient (3/4), driver?
mutation
VAF
driver gene
6.2 years ago by
CY
▴ 750
0
votes
0
replies
7.0k
views
Comment:
C: What kind of distribution to you expect to see for RNA-Seq expression levels?
6.2 years ago by
CY
▴ 750
0
votes
0
replies
1.6k
views
Comment:
C: Would different enrichment tools result differently by defining pathway differen
6.2 years ago by
CY
▴ 750
4
votes
4
replies
1.6k
views
Would different enrichment tools result differently by defining pathway differently
RNA-Seq
enrichment analysis
6.2 years ago by
CY
▴ 750
0
votes
1
reply
1.6k
views
Comment:
C: Difference between gene set enrichment and pathway enrichment
6.2 years ago by
CY
▴ 750
278 results • Page
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