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3
votes
0
replies
8.2k
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Comment: C: RNA-Seq: Getting Started with Kallisto
4.8 years ago by Lila M ★ 1.2k
2
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0
replies
4.4k
views
Comment: C: How to use htseq-count with several samples ?
4.8 years ago by Lila M ★ 1.2k
0
votes
1
reply
835
views
Comment: C: where to download methylation data for colorectal cancer?
4.9 years ago by Lila M ★ 1.2k
2
votes
3
replies
835
views
where to download methylation data for colorectal cancer?
methylation colorectal public data data
updated 4.9 years ago by ★ 16k • written 4.9 years ago by ★ 1.2k
1
vote
2
replies
2.0k
views
Comment: C: Column that include Enterez ID converted from wheat Ensemble ID using biomart pa
4.9 years ago by Lila M ★ 1.2k
17
votes
18
replies
2.9k
views
How to deal with data set harmonization in R
R coalesce harmonization data cleaning
updated 4.9 years ago by 8.9k • written 4.9 years ago by ★ 1.2k
0
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1
reply
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
0
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1
reply
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
0
votes
0
replies
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
0
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1
reply
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
0
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3
replies
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
0
votes
1
reply
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
1
vote
1
reply
2.9k
views
Comment: C: How to deal with data set harmonization in R
4.9 years ago by Lila M ★ 1.2k
5
votes
4
replies
1.2k
views
what is the best way to calculate significant differences in tss profiles?
coverage differences tss
updated 5.0 years ago by 20 • written 5.2 years ago by ★ 1.2k
0
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1
reply
1.1k
views
Comment: C: probles with loess normalization in affy
5.0 years ago by Lila M ★ 1.2k
3
votes
3
replies
1.1k
views
probles with loess normalization in affy
affy microarray loess normalization
5.0 years ago by Lila M ★ 1.2k
2
votes
1
reply
1.1k
views
How to analyze a ratio data set at different replication time point.
reliscan ratio repliseq
updated 5.0 years ago by 20 • written 5.9 years ago by ★ 1.2k
1
vote
0
replies
3.8k
views
Comment: C: how to solve this problem in bedtools genomecov?
5.1 years ago by Lila M ★ 1.2k
1
vote
1
reply
3.8k
views
Comment: C: how to solve this problem in bedtools genomecov?
5.1 years ago by Lila M ★ 1.2k
1
vote
1
reply
3.8k
views
Comment: C: how to solve this problem in bedtools genomecov?
5.1 years ago by Lila M ★ 1.2k
12
votes
7
replies
3.8k
views
how to solve this problem in bedtools genomecov?
bedtools genomecov mouse
updated 5.1 years ago by 82k • written 5.1 years ago by ★ 1.2k
0
votes
0
replies
1.1k
views
How can I get the ID reference genes in GEO ?
ID reference GEO gene ID
5.1 years ago by Lila M ★ 1.2k
2
votes
2
replies
1.9k
views
error in prepare annotation script DEXseq
DEXseq RNAseq Ensamble gencode DEU
updated 5.1 years ago by • 0 • written 5.3 years ago by ★ 1.2k
0
votes
0
replies
1.2k
views
Comment: C: what is the best way to calculate significant differences in tss profiles?
5.2 years ago by Lila M ★ 1.2k
2
votes
0
replies
2.4k
views
Comment: C: How to calculate read depth for a specific gene list?
5.3 years ago by Lila M ★ 1.2k
0
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1
reply
2.4k
views
Comment: C: How to calculate read depth for a specific gene list?
5.3 years ago by Lila M ★ 1.2k
6
votes
4
replies
2.4k
views
How to calculate read depth for a specific gene list?
coverage readdepth interesct
5.3 years ago by Lila M ★ 1.2k
0
votes
0
replies
1.4k
views
Comment: C: how to plot a TSS profile using an external quantification for Watson and Crick
5.3 years ago by Lila M ★ 1.2k
0
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0
replies
1.4k
views
Comment: C: how to plot a TSS profile using an external quantification for Watson and Crick
5.3 years ago by Lila M ★ 1.2k
2
votes
3
replies
1.4k
views
how to plot a TSS profile using an external quantification for Watson and Crick strand
ggplot TSS coverage ratio
5.3 years ago by Lila M ★ 1.2k
3
votes
1
reply
6.1k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.3 years ago by Lila M ★ 1.2k
1
vote
1
reply
6.1k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.3 years ago by Lila M ★ 1.2k
0
votes
1
reply
6.1k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.3 years ago by Lila M ★ 1.2k
0
votes
0
replies
6.1k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.3 years ago by Lila M ★ 1.2k
1
vote
1
reply
6.1k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.3 years ago by Lila M ★ 1.2k
0
votes
1
reply
6.1k
views
Comment: C: error while reading bigwig files in computeMatrix (deeptools)
5.3 years ago by Lila M ★ 1.2k
0
votes
0
replies
1.0k
views
How to deal with wig files separate bu watson and crick strand
wig GROseq TSSprofile deepTools
5.3 years ago by Lila M ★ 1.2k
1
vote
1
reply
2.8k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.3 years ago by Lila M ★ 1.2k
0
votes
2
replies
2.8k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.3 years ago by Lila M ★ 1.2k
1
vote
1
reply
2.8k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.3 years ago by Lila M ★ 1.2k
0
votes
0
replies
2.8k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.3 years ago by Lila M ★ 1.2k
16
votes
13
replies
2.8k
views
how to get correlation between the counts over each gene at the same timepoint (two replicates)
RNA-Seq HTSeq replication correlation
updated 5.3 years ago by 11k • written 5.3 years ago by ★ 1.2k
1
vote
1
reply
2.8k
views
Comment: C: how to get correlation between the counts over each gene at the same timepoint (
5.3 years ago by Lila M ★ 1.2k
0
votes
0
replies
1.3k
views
Comment: C: how can I get the coverage over introns only in a RNA-seq experiment?
5.5 years ago by Lila M ★ 1.2k
2
votes
3
replies
1.3k
views
how can I get the coverage over introns only in a RNA-seq experiment?
RNA-Seq coverage introns
5.5 years ago by Lila M ★ 1.2k
48
votes
14
replies
21k
views
8 follow
should I merge fastq files for different lanes before do QC?
RNA-Seq merge QC
updated 5.6 years ago by ▴ 70 • written 6.6 years ago by ★ 1.2k
9
votes
9
replies
3.3k
views
Problems running variant calling (VC) GATK: SAM/BAM/CRAM file dedup.bam is malformed
GATK VC RNA-Seq
5.7 years ago by Lila M ★ 1.2k
0
votes
3
replies
3.3k
views
Comment: C: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
5.7 years ago by Lila M ★ 1.2k
0
votes
1
reply
3.3k
views
Comment: C: Problems running VC GATK: SAM/BAM/CRAM file dedup.bam is malformed
5.7 years ago by Lila M ★ 1.2k
0
votes
0
replies
1.7k
views
Comment: C: How can I get only the rows when for the converge points : - +
5.7 years ago by Lila M ★ 1.2k
445 results • Page 4 of 9
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