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5
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0
replies
16k
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Comment:
Comment: How to use FindSubCluster in Seurat?
3.3 years ago by
Pietro
▴ 240
0
votes
1
reply
1.8k
views
Are singscore scores comparable between gene sets?
singscore
GSVA
GSEA
subtypes
genesets
updated 5.0 years ago by
vikram56j
• 0 • written 5.6 years ago by
Pietro
▴ 240
0
votes
0
replies
5.6k
views
Comment:
C: How to proceed after removing batch effect with limma?
5.3 years ago by
Pietro
▴ 240
0
votes
0
replies
3.1k
views
Comment:
C: Question about gene ontology data visualization
5.3 years ago by
Pietro
▴ 240
1
vote
1
reply
5.6k
views
Answer:
A: How to proceed after removing batch effect with limma?
5.3 years ago by
Pietro
▴ 240
0
votes
2
replies
3.1k
views
Answer:
A: Question about gene ontology data visualization
5.3 years ago by
Pietro
▴ 240
0
votes
2
replies
8.1k
views
Comment:
C: z score transformation by population or by gene?
5.4 years ago by
Pietro
▴ 240
0
votes
1
reply
8.1k
views
Comment:
C: z score transformation by population or by gene?
5.4 years ago by
Pietro
▴ 240
1
vote
6
replies
8.1k
views
z score transformation by population or by gene?
z score
RNA-Seq
microarray
transformation
updated 5.4 years ago by
Kevin Blighe
88k • written 5.4 years ago by
Pietro
▴ 240
0
votes
0
replies
1.2k
views
Comment:
C: How to normalize NCI-60 gene expression data
5.5 years ago by
Pietro
▴ 240
0
votes
1
reply
5.1k
views
Comment:
C: Fold change cut off enrichment analysis
5.5 years ago by
Pietro
▴ 240
2
votes
4
replies
5.1k
views
Fold change cut off enrichment analysis
RNA-Seq
enrichment
ontology
fold change
cutoff
updated 5.5 years ago by
shawn.w.foley
★ 1.3k • written 5.5 years ago by
Pietro
▴ 240
14
votes
2
replies
22k
views
Answer:
A: What is the best way to rank genes for GSEA?
5.5 years ago by
Pietro
▴ 240
0
votes
7
replies
2.1k
views
Experimental design RNAseq differential expression
limma
edger
RNA-Seq
batch
differential expression
updated 5.5 years ago by
Biostar
20 • written 5.6 years ago by
Pietro
▴ 240
0
votes
1
reply
2.1k
views
Comment:
C: Experimental design RNAseq differential expression
5.6 years ago by
Pietro
▴ 240
0
votes
1
reply
2.1k
views
Comment:
C: Experimental design RNAseq differential expression
5.6 years ago by
Pietro
▴ 240
0
votes
1
reply
2.1k
views
Comment:
C: Experimental design RNAseq differential expression
5.6 years ago by
Pietro
▴ 240
0
votes
1
reply
1.7k
views
Comment:
C: GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
5.6 years ago by
Pietro
▴ 240
0
votes
0
replies
3.0k
views
Answer:
A: Intuitive explanation of GSVA analysis
5.6 years ago by
Pietro
▴ 240
1
vote
0
replies
37k
views
Answer:
A: how to interpret NES(normalized enrichment score)?
5.7 years ago by
Pietro
▴ 240
0
votes
1
reply
1.6k
views
Comment:
C: Tumor subtype classification when genes of gene set are missing from samples - G
5.8 years ago by
Pietro
▴ 240
0
votes
3
replies
1.6k
views
Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
RNA-Seq
GSVA
TCGA
geneset
subtypes
updated 5.8 years ago by
Kevin Blighe
88k • written 5.8 years ago by
Pietro
▴ 240
1
vote
0
replies
3.0k
views
Answer:
A: Does anyone have the software "Xenome" a tool for classifying reads from xenogra
6.7 years ago by
Pietro
▴ 240
0
votes
0
replies
1.7k
views
Comment:
C: Why does shoremap calculate allele frequency this way?
6.8 years ago by
Pietro
▴ 240
5
votes
9
replies
2.6k
views
How to check if a gene is comprised in a certain interval? with R
gene
R
genome
sequence
updated 2.2 years ago by
Ram
44k • written 8.9 years ago by
Pietro
▴ 240
0
votes
2
replies
2.6k
views
Comment:
C: How to check if a gene is comprised in a certain interval? with R
8.9 years ago by
Pietro
▴ 240
0
votes
0
replies
2.6k
views
Comment:
A: How to check if a gene is comprised in a certain interval? with R
8.9 years ago by
Pietro
▴ 240
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