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Comment: Comment: Conda failing to install VEP
3.9 years ago by michael.flower.14 ▴ 210
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2.8k
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Comment: Comment: Conda failing to install VEP
3.9 years ago by michael.flower.14 ▴ 210
3
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3
replies
2.8k
views
Conda failing to install VEP
VEP conda
updated 3.9 years ago by ▴ 540 • written 3.9 years ago by ▴ 210
0
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0
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3.5k
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Comment: Comment: Failing to install VEP dependencies
3.9 years ago by michael.flower.14 ▴ 210
0
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1
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3.5k
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Comment: Comment: Failing to install VEP dependencies
3.9 years ago by michael.flower.14 ▴ 210
0
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0
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2.5k
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Comment: Comment: Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator workin
3.9 years ago by michael.flower.14 ▴ 210
0
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1
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2.5k
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Comment: Comment: Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator workin
3.9 years ago by michael.flower.14 ▴ 210
0
votes
4
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3.5k
views
Failing to install VEP dependencies
yep cpanm DBI
3.9 years ago by michael.flower.14 ▴ 210
0
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1
reply
2.5k
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Comment: Comment: Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator workin
3.9 years ago by michael.flower.14 ▴ 210
0
votes
6
replies
2.5k
views
Padding out a GVCF file with 1000G exomes to get gatk VariantRecalibrator working with a small sample
variantrecalibrator gatk gvcf
3.9 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
913
views
gatk VariantRecalibrator positional argument error
VariantRecalibrator gatk vcf
3.9 years ago by michael.flower.14 ▴ 210
1
vote
2
replies
1.0k
views
Using comm to make a list of files that haven't yet been processed
linux comm
updated 3.9 years ago by 166k • written 3.9 years ago by ▴ 210
0
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0
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2.6k
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Comment: Comment: Removing diff syntax from its output
3.9 years ago by michael.flower.14 ▴ 210
0
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1
reply
2.6k
views
Comment: Comment: Removing diff syntax from its output
3.9 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
11k
views
Comment: Comment: Changing the default location for conda install
3.9 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
926
views
Making consensus sequence for each haplotype
bcftools consensus
3.9 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
2.6k
views
Comment: Comment: Removing diff syntax from its output
3.9 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
11k
views
Comment: Comment: Changing the default location for conda install
3.9 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
2.6k
views
Comment: Comment: Removing diff syntax from its output
3.9 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
2.6k
views
Comment: Comment: Removing diff syntax from its output
3.9 years ago by michael.flower.14 ▴ 210
3
votes
9
replies
2.6k
views
Removing diff syntax from its output
diff linux
3.9 years ago by michael.flower.14 ▴ 210
4
votes
4
replies
11k
views
Changing the default location for conda install
conda linux install
updated 3.9 years ago by 154k • written 3.9 years ago by ▴ 210
0
votes
0
replies
851
views
Consensus sequence for phased variant calls
gatk phasing bcftools consensus
4.0 years ago by michael.flower.14 ▴ 210
0
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0
replies
2.9k
views
Comment: Comment: Using tabix to subset a region from a VCF file
4.0 years ago by michael.flower.14 ▴ 210
2
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3
replies
2.9k
views
Using tabix to subset a region from a VCF file
tabix conda vcf
4.0 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
801
views
SHAPEIT phased haps file does not contain my SNPs of interest
phasing SHAPEIT conda
4.0 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
1.2k
views
Convert SHAPEIT haps file to vcf
vcf shapeit conda
updated 2.3 years ago by 45k • written 4.0 years ago by ▴ 210
3
votes
3
replies
2.6k
views
SHAPEIT using VCF unphased genotype input
VCF SHAPEIT
4.0 years ago by michael.flower.14 ▴ 210
3
votes
0
replies
2.6k
views
Answer: Answer: SHAPEIT using VCF unphased genotype input
4.0 years ago by michael.flower.14 ▴ 210
0
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0
replies
2.6k
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Comment: Comment: SHAPEIT using VCF unphased genotype input
4.0 years ago by michael.flower.14 ▴ 210
1
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0
replies
1.4k
views
Comment: Comment: Running GATK HaplotypeCaller over just one chromosome of a whole genome bam file
4.0 years ago by michael.flower.14 ▴ 210
1
vote
1
reply
1.4k
views
Running GATK HaplotypeCaller over just one chromosome of a whole genome bam file
GATK conda HaplotypeCaller
4.0 years ago by michael.flower.14 ▴ 210
0
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0
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2.5k
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Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
4.0 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
2.5k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
4.0 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
1.6k
views
Comment: Comment: PGT only available for some variants in GATK .vcf
4.0 years ago by michael.flower.14 ▴ 210
0
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1
reply
2.5k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
4.0 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
2.5k
views
Comment: Comment: GATK HaplotypeCaller works without GVCF option, but errors with GVCF
4.0 years ago by michael.flower.14 ▴ 210
0
votes
7
replies
2.5k
views
GATK HaplotypeCaller works without GVCF option, but errors with GVCF
picard GATK conda
4.0 years ago by michael.flower.14 ▴ 210
1
vote
2
replies
1.6k
views
PGT only available for some variants in GATK .vcf
GATK conda
4.0 years ago by michael.flower.14 ▴ 210
2
votes
2
replies
2.6k
views
GATK Mutect2 errors during basic variant calling
GATK conda
4.0 years ago by michael.flower.14 ▴ 210
2
votes
0
replies
2.6k
views
Answer: Answer: GATK Mutect2 errors during basic variant calling
4.0 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
11k
views
Comment: Comment: Using GATK in conda
4.0 years ago by michael.flower.14 ▴ 210
10
votes
3
replies
11k
views
Using GATK in conda
gatk conda
updated 3.3 years ago by • 0 • written 4.0 years ago by ▴ 210
0
votes
2
replies
1.4k
views
Importing WGCNA edge and node files into Cytoscape
WGCNA Cytoscape
updated 4.1 years ago by ▴ 310 • written 4.1 years ago by ▴ 210
1
vote
1
reply
1.1k
views
Syntax error when running ScaleHD
repeats expansion illumina ScaleHD amplicon
updated 3.3 years ago by ▴ 60 • written 4.3 years ago by ▴ 210
0
votes
1
reply
4.0k
views
Comment: Comment: Problems running gatk - gatk: command not found
4.4 years ago by michael.flower.14 ▴ 210
0
votes
3
replies
4.0k
views
Problems running gatk - gatk: command not found
vcf bam gatk
updated 4.4 years ago by ★ 1.2k • written 4.4 years ago by ▴ 210
0
votes
0
replies
3.8k
views
Comment: Comment: How to set a multiqc outpath
4.4 years ago by michael.flower.14 ▴ 210
2
votes
2
replies
3.8k
views
How to set a multiqc outpath
fastqc multiqc
4.4 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
6.6k
views
Comment: Comment: bcftools command not found
4.4 years ago by michael.flower.14 ▴ 210
121 results • Page 2 of 3
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