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how to find the overlapping genomic sites for two big mpileup files and make a window file around these overlapping sites
sequence alignment genome
updated 5.3 years ago by 20 • written 6.2 years ago by ▴ 60
1
vote
5
replies
4.7k
views
no successful variants lifted over from hs37d5_plusRibo_plusOncoViruses_plusERCC.fa to GRCh38
Assembly
updated 5.6 years ago by • 0 • written 5.8 years ago by ▴ 60
1
vote
0
replies
1.1k
views
inaccurate max per-file depth in samtools mpileup
sequencing
5.8 years ago by jing.mengrabbit ▴ 60
3
votes
3
replies
5.3k
views
how to split a coordinate-sorted bam file by read group
sequencing
updated 5.8 years ago by 16k • written 5.8 years ago by ▴ 60
2
votes
4
replies
2.8k
views
samtools mpileup's options -b (more than one bam file) and -r cannot be used together
software error sequence
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 60
0
votes
5
replies
5.2k
views
How to read two non-consecutive lines in a file once in python
genome sequencing
updated 6.1 years ago by ▴ 260 • written 6.1 years ago by ▴ 60
3
votes
2
replies
1.9k
views
samtools pileup format: insertions and deletions' quality
sequencing alignment genome
updated 6.2 years ago by 3.0k • written 6.2 years ago by ▴ 60
2
votes
5
replies
2.8k
views
how to use the option of --rf and the options of -a and -a -a (-aa) in samtools mpileup
sequence genome
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 60
2
votes
2
replies
3.1k
views
identify the type of repeat genomic region of a BED file
genome sequence
updated 6.5 years ago by 35k • written 6.5 years ago by ▴ 60
8
votes
15
replies
2.2k
views
6 follow
multiprocesses vs multithreads in application
software error
6.8 years ago by jing.mengrabbit ▴ 60
0
votes
0
replies
1.8k
views
BAMSurgeon error report: bam readcount < fastq readcount, alignment sanity check failed!
software error genome
6.8 years ago by jing.mengrabbit ▴ 60
6
votes
6
replies
3.8k
views
how to randomly select intervals of different lengths (not records) from a BED file
sequence genome
updated 6.9 years ago by ★ 3.4k • written 6.9 years ago by ▴ 60
0
votes
0
replies
1.0k
views
MuTect short read preprocessing
overlapping PE reads mismatching positions
8.2 years ago by jing.mengrabbit ▴ 60
13 results • Page 1 of 1
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