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Why does bcftools call from different max-depth (-d) value in mpileup give inconstant GT values?
vcf variant-calling bcftools mpileup
updated 10 months ago by 43k • written 14 months ago by ▴ 20
0
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0
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313
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Which files contain overview information from Monarch Initiative?
monarch initiative
15 months ago by magnolia ▴ 20
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0
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660
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Comment: Comment: How to obtain upstream variant genes?
16 months ago by magnolia ▴ 20
1
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2
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660
views
How to obtain upstream variant genes?
snp dbsnp gene variant
16 months ago by magnolia ▴ 20
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0
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1.1k
views
Comment: Comment: Is possible to run VEP without consequence calculation?
18 months ago by magnolia ▴ 20
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1
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1.1k
views
Comment: Comment: Is possible to run VEP without consequence calculation?
18 months ago by magnolia ▴ 20
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0
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1.1k
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Comment: Comment: Is possible to run VEP without consequence calculation?
18 months ago by magnolia ▴ 20
0
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1
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1.1k
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Comment: Comment: Is possible to run VEP without consequence calculation?
18 months ago by magnolia ▴ 20
4
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8
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1.1k
views
Is possible to run VEP without consequence calculation?
vep annotation
18 months ago by magnolia ▴ 20
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0
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464
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Comment: Comment: Is there a resource on how to create variant annotator from scratch?
18 months ago by magnolia ▴ 20
1
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2
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464
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Is there a resource on how to create variant annotator from scratch?
annotation variant
18 months ago by magnolia ▴ 20
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0
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2.1k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
19 months ago by magnolia ▴ 20
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1
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2.1k
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Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
19 months ago by magnolia ▴ 20
0
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1
reply
2.1k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
19 months ago by magnolia ▴ 20
0
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1
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2.1k
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
19 months ago by magnolia ▴ 20
0
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1
reply
2.1k
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Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
19 months ago by magnolia ▴ 20
0
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0
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380
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How assign PAR regions to X or Y for an rsID in VCF?
vcf rsid par
19 months ago by magnolia ▴ 20
5
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10
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2.1k
views
How to change chromosome names in assembly fasta downloaded from NCBI?
grch38 ncbi grch37 fasta
19 months ago by magnolia ▴ 20
0
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0
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544
views
How to install/run pysam bcftools plugins?
bcftools pysam
updated 10 months ago by 43k • written 19 months ago by ▴ 20
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0
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474
views
Comment: Comment: How variant locations work when there is an INDEL around?
20 months ago by magnolia ▴ 20
1
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2
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474
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How variant locations work when there is an INDEL around?
snp indel variant
20 months ago by magnolia ▴ 20
0
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0
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907
views
Comment: Comment: How to insert dbSNP in a database?
20 months ago by magnolia ▴ 20
0
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1
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907
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Comment: Comment: How to insert dbSNP in a database?
20 months ago by magnolia ▴ 20
1
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4
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907
views
How to insert dbSNP in a database?
dbsnp database
20 months ago by magnolia ▴ 20
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0
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
20 months ago by magnolia ▴ 20
9
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18
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3.0k
views
How to determine assembly of a VCF?
vcf
updated 20 months ago by 4.2k • written 21 months ago by ▴ 20
0
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1
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
21 months ago by magnolia ▴ 20
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1
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
21 months ago by magnolia ▴ 20
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0
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
21 months ago by magnolia ▴ 20
0
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1
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
21 months ago by magnolia ▴ 20
0
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1
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
21 months ago by magnolia ▴ 20
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0
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3.0k
views
Comment: Comment: How to determine assembly of a VCF?
21 months ago by magnolia ▴ 20
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0
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2.9k
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Comment: Comment: Is there equivalent of bgzip in Python?
2.1 years ago by magnolia ▴ 20
5
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4
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2.9k
views
Is there equivalent of bgzip in Python?
python bgzip
2.1 years ago by magnolia ▴ 20
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0
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2.9k
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Comment: Comment: Is there equivalent of bgzip in Python?
2.1 years ago by magnolia ▴ 20
0
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0
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1.8k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.3 years ago by magnolia ▴ 20
0
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0
replies
1.8k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.3 years ago by magnolia ▴ 20
0
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1
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1.8k
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Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.3 years ago by magnolia ▴ 20
0
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2
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1.8k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
2.3 years ago by magnolia ▴ 20
3
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8
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1.8k
views
Why VCF POS different in dbSNP and ClinVar?
vep clinvar dbsnp vcf
2.3 years ago by magnolia ▴ 20
0
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0
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706
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Comment: Comment: How to parse VCF in Node/Javascript? (equivalent of pyVCF)
2.3 years ago by magnolia ▴ 20
0
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2
replies
706
views
How to parse VCF in Node/Javascript? (equivalent of pyVCF)
javascript node vcf
2.3 years ago by magnolia ▴ 20
0
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0
replies
1.1k
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
3.2 years ago by magnolia ▴ 20
5
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5
replies
1.5k
views
Why VEP doesn't take strand into account?
vep ensembl snp
updated 3.2 years ago by 23k • written 3.2 years ago by ▴ 20
3
votes
7
replies
1.1k
views
Why VEP annotates non-variants (homozygous reference)?
vep ensembl SNP
updated 3.2 years ago by 23k • written 3.2 years ago by ▴ 20
0
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1
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1.1k
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Comment: C: Why VEP annotates non-variants (homozygous reference)?
3.2 years ago by magnolia ▴ 20
0
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1
reply
1.1k
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
3.2 years ago by magnolia ▴ 20
0
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0
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1.5k
views
Comment: C: Why VEP doesn't take strand into account?
3.2 years ago by magnolia ▴ 20
0
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1
reply
1.5k
views
Comment: C: Why VEP doesn't take strand into account?
3.2 years ago by magnolia ▴ 20
1
vote
1
reply
884
views
How to get human gene locations via Python?
gene python
3.7 years ago by magnolia ▴ 20
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