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175
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Why does bcftools call from different max-depth (-d) value in mpileup give inconstant GT values?
mpileup pileup vcf calling bcftools variant
3 months ago by magnolia ▴ 20
0
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0
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206
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Which files contain overview information from Monarch Initiative?
monarch initiative
4 months ago by magnolia ▴ 20
0
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0
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380
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Comment: Comment: How to obtain upstream variant genes?
5 months ago by magnolia ▴ 20
1
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2
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380
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How to obtain upstream variant genes?
snp dbsnp gene variant
5 months ago by magnolia ▴ 20
1
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0
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716
views
Comment: Comment: Is possible to run VEP without consequence calculation?
7 months ago by magnolia ▴ 20
0
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1
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716
views
Comment: Comment: Is possible to run VEP without consequence calculation?
7 months ago by magnolia ▴ 20
0
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0
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716
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Comment: Comment: Is possible to run VEP without consequence calculation?
7 months ago by magnolia ▴ 20
0
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1
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716
views
Comment: Comment: Is possible to run VEP without consequence calculation?
7 months ago by magnolia ▴ 20
4
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8
replies
716
views
Is possible to run VEP without consequence calculation?
vep annotation
7 months ago by magnolia ▴ 20
0
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0
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279
views
Comment: Comment: Is there a resource on how to create variant annotator from scratch?
7 months ago by magnolia ▴ 20
1
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2
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279
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Is there a resource on how to create variant annotator from scratch?
annotation variant
7 months ago by magnolia ▴ 20
0
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0
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881
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
8 months ago by magnolia ▴ 20
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1
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881
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
8 months ago by magnolia ▴ 20
0
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1
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881
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
8 months ago by magnolia ▴ 20
0
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1
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881
views
Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
8 months ago by magnolia ▴ 20
0
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1
reply
881
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Comment: Comment: How to change chromosome names in assembly fasta downloaded from NCBI?
8 months ago by magnolia ▴ 20
0
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0
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242
views
How assign PAR regions to X or Y for an rsID in VCF?
vcf rsid par
8 months ago by magnolia ▴ 20
5
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10
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881
views
How to change chromosome names in assembly fasta downloaded from NCBI?
grch38 ncbi grch37 fasta
8 months ago by magnolia ▴ 20
0
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0
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309
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How to install/run pysam bcftools plugins?
pysam bcftools
8 months ago by magnolia ▴ 20
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0
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307
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Comment: Comment: How variant locations work when there is an INDEL around?
9 months ago by magnolia ▴ 20
1
vote
2
replies
307
views
How variant locations work when there is an INDEL around?
snp indel variant
9 months ago by magnolia ▴ 20
0
votes
0
replies
649
views
Comment: Comment: How to insert dbSNP in a database?
9 months ago by magnolia ▴ 20
0
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1
reply
649
views
Comment: Comment: How to insert dbSNP in a database?
9 months ago by magnolia ▴ 20
1
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4
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649
views
How to insert dbSNP in a database?
dbsnp database
9 months ago by magnolia ▴ 20
0
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0
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1.9k
views
Comment: Comment: How to determine assembly of a VCF?
9 months ago by magnolia ▴ 20
9
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18
replies
1.9k
views
How to determine assembly of a VCF?
vcf
updated 9 months ago by ★ 2.8k • written 10 months ago by ▴ 20
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1
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1.9k
views
Comment: Comment: How to determine assembly of a VCF?
10 months ago by magnolia ▴ 20
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1
reply
1.9k
views
Comment: Comment: How to determine assembly of a VCF?
10 months ago by magnolia ▴ 20
0
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0
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1.9k
views
Comment: Comment: How to determine assembly of a VCF?
10 months ago by magnolia ▴ 20
0
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1
reply
1.9k
views
Comment: Comment: How to determine assembly of a VCF?
10 months ago by magnolia ▴ 20
0
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1
reply
1.9k
views
Comment: Comment: How to determine assembly of a VCF?
10 months ago by magnolia ▴ 20
0
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0
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1.9k
views
Comment: Comment: How to determine assembly of a VCF?
10 months ago by magnolia ▴ 20
0
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0
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1.6k
views
Comment: Comment: Is there equivalent of bgzip in Python?
14 months ago by magnolia ▴ 20
5
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4
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1.6k
views
Is there equivalent of bgzip in Python?
python bgzip
14 months ago by magnolia ▴ 20
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0
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1.6k
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Comment: Comment: Is there equivalent of bgzip in Python?
14 months ago by magnolia ▴ 20
0
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0
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1.2k
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Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
17 months ago by magnolia ▴ 20
0
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0
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1.2k
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Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
17 months ago by magnolia ▴ 20
0
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1
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1.2k
views
Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
17 months ago by magnolia ▴ 20
0
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2
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1.2k
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Comment: Comment: Why VCF POS different in dbSNP and ClinVar?
17 months ago by magnolia ▴ 20
3
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8
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1.2k
views
Why VCF POS different in dbSNP and ClinVar?
vep clinvar dbsnp vcf
17 months ago by magnolia ▴ 20
0
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0
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485
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Comment: Comment: How to parse VCF in Node/Javascript? (equivalent of pyVCF)
17 months ago by magnolia ▴ 20
0
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2
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485
views
How to parse VCF in Node/Javascript? (equivalent of pyVCF)
javascript node vcf
17 months ago by magnolia ▴ 20
0
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0
replies
777
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
2.3 years ago by magnolia ▴ 20
5
votes
5
replies
1.1k
views
Why VEP doesn't take strand into account?
vep ensembl snp
updated 2.3 years ago by 23k • written 2.3 years ago by ▴ 20
3
votes
7
replies
777
views
Why VEP annotates non-variants (homozygous reference)?
vep ensembl SNP
updated 2.3 years ago by 23k • written 2.3 years ago by ▴ 20
0
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1
reply
777
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
2.3 years ago by magnolia ▴ 20
0
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1
reply
777
views
Comment: C: Why VEP annotates non-variants (homozygous reference)?
2.3 years ago by magnolia ▴ 20
0
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0
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1.1k
views
Comment: C: Why VEP doesn't take strand into account?
2.3 years ago by magnolia ▴ 20
0
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1
reply
1.1k
views
Comment: C: Why VEP doesn't take strand into account?
2.3 years ago by magnolia ▴ 20
1
vote
1
reply
713
views
How to get human gene locations via Python?
gene python
2.8 years ago by magnolia ▴ 20
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