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2
votes
2
replies
3.4k
views
Setting/finding the log odds detection threshold in custom homer PWMs
jaspar motif homer
updated 5.0 years ago by ★ 19k • written 7.5 years ago by ▴ 980
11
votes
9
replies
5.2k
views
How do I compute ld blocks from the hapmap ld_data?
ld snps
updated 4.1 years ago by ▴ 20 • written 5.8 years ago by ▴ 980
2
votes
1
reply
5.2k
views
Answer: A: How do I compute ld blocks from the hapmap ld_data?
5.8 years ago by endrebak ▴ 980
0
votes
0
replies
5.2k
views
Comment: C: How do I compute ld blocks from the hapmap ld_data?
5.8 years ago by endrebak ▴ 980
0
votes
1
reply
5.2k
views
Comment: C: How do I compute ld blocks from the hapmap ld_data?
5.8 years ago by endrebak ▴ 980
0
votes
0
replies
943
views
Global HMM annotation state bed for epigenome roadmap data?
roadmap epigenomics
5.9 years ago by endrebak ▴ 980
0
votes
0
replies
9.1k
views
Comment: C: Batch Viewing Of Ucsc Browser Graphic
updated 6.0 years ago by 45k • written 9.1 years ago by ▴ 980
0
votes
0
replies
5.4k
views
Comment: C: New ultraperformant version of SICER/epic: epic2
6.1 years ago by endrebak ▴ 980
4
votes
2
replies
3.5k
views
Tool: (pre-alpha) pyranges: performant, pythonic GenomicRanges
python genomicranges
updated 2.2 years ago by 45k • written 7.3 years ago by ▴ 980
0
votes
0
replies
3.6k
views
Answer: A: Fast datastructure to get counts of overlapping reads per nucleotide (!) in Pyth
6.2 years ago by endrebak ▴ 980
23
votes
14
replies
3.6k
views
Fast datastructure to get counts of overlapping reads per nucleotide (!) in Python?
python data-structure
6.2 years ago by endrebak ▴ 980
0
votes
1
reply
1.2k
views
Comment: C: What do the positions '31776605 x 95917441' mean in GWAS catalogue data?
6.2 years ago by endrebak ▴ 980
2
votes
3
replies
1.2k
views
What do the positions '31776605 x 95917441' mean in GWAS catalogue data?
gwas-catalogue
updated 6.2 years ago by ▴ 660 • written 6.2 years ago by ▴ 980
0
votes
0
replies
1.6k
views
Comment: C: Loading bigiwg into an an array in javascript?
6.3 years ago by endrebak ▴ 980
0
votes
0
replies
1.6k
views
Comment: C: Loading bigiwg into an an array in javascript?
6.3 years ago by endrebak ▴ 980
0
votes
4
replies
1.6k
views
Loading bigiwg into an an array in javascript?
bigwig javascript
6.3 years ago by endrebak ▴ 980
0
votes
0
replies
5.4k
views
Comment: C: New ultraperformant version of SICER/epic: epic2
6.3 years ago by endrebak ▴ 980
5
votes
7
replies
2.9k
views
How do I split a genomicrange on chromosome and strand?
genomicranges r bioconductor
updated 3.8 years ago by ▴ 210 • written 6.4 years ago by ▴ 980
4
votes
0
replies
2.8k
views
Answer: A: pythonic equivalent to reduce() in R GRanges - how to collapse ranged data?
6.4 years ago by endrebak ▴ 980
1
vote
0
replies
5.5k
views
Answer: A: Handling Ranged Data In Python
6.4 years ago by endrebak ▴ 980
0
votes
0
replies
3.9k
views
Answer: A: What Is The Best Library For Handling Interval Logic?
6.4 years ago by endrebak ▴ 980
0
votes
0
replies
2.7k
views
Answer: A: Can EPIC call peaks on files without control?
6.4 years ago by endrebak ▴ 980
0
votes
0
replies
3.2k
views
Answer: A: Current status of EPIC peak caller
6.4 years ago by endrebak ▴ 980
0
votes
0
replies
6.3k
views
Answer: A: Create bigwigs in python?
6.4 years ago by endrebak ▴ 980
6
votes
5
replies
6.3k
views
Create bigwigs in python?
ChIP-Seq
6.4 years ago by endrebak ▴ 980
0
votes
0
replies
2.9k
views
Comment: C: How do I split a genomicrange on chromosome and strand?
6.4 years ago by endrebak ▴ 980
0
votes
1
reply
2.9k
views
Comment: C: How do I split a genomicrange on chromosome and strand?
6.4 years ago by endrebak ▴ 980
0
votes
1
reply
2.9k
views
Comment: C: How do I split a genomicrange on chromosome and strand?
6.4 years ago by endrebak ▴ 980
0
votes
1
reply
5.2k
views
Comment: C: RefGene: how to find the starts and ends of genes?
6.5 years ago by endrebak ▴ 980
7
votes
9
replies
5.2k
views
RefGene: how to find the starts and ends of genes?
refgene ucsc
updated 6.5 years ago by ▴ 670 • written 6.5 years ago by ▴ 980
0
votes
1
reply
1.6k
views
Comment: C: Can I get the same annotation data that is in ensembl gene annotation sets throu
6.5 years ago by endrebak ▴ 980
0
votes
1
reply
1.8k
views
Comment: C: How do I get ensembl genome sizes with mysql?
6.5 years ago by endrebak ▴ 980
2
votes
3
replies
1.6k
views
Can I get the same annotation data that is in ensembl gene annotation sets through mysql?
ensembl gtf
updated 6.5 years ago by 24k • written 6.5 years ago by ▴ 980
3
votes
3
replies
1.8k
views
How do I get ensembl genome sizes with mysql?
ensembl
updated 6.5 years ago by 24k • written 6.5 years ago by ▴ 980
0
votes
1
reply
5.2k
views
Comment: C: RefGene: how to find the starts and ends of genes?
6.5 years ago by endrebak ▴ 980
0
votes
1
reply
5.2k
views
Comment: C: RefGene: how to find the starts and ends of genes?
6.5 years ago by endrebak ▴ 980
1
vote
1
reply
5.4k
views
Answer: A: New ultraperformant version of SICER/epic: epic2
6.5 years ago by endrebak ▴ 980
0
votes
0
replies
8.8k
views
Comment: C: New ultrafast interval tree implementation for Python: kerneltree
6.5 years ago by endrebak ▴ 980
13
votes
5
replies
2.3k
views
How do I get a list of all species with a fasta genome in UCSC?
UCSC
updated 6.9 years ago by 20 • written 8.2 years ago by ▴ 980
0
votes
5
replies
4.9k
views
Can genomicranges do bedtools-like intersection operations?
R
updated 7.2 years ago by ▴ 970 • written 7.2 years ago by ▴ 980
0
votes
1
reply
4.9k
views
Comment: C: Can genomicranges do bedtools-like intersection operations?
7.2 years ago by endrebak ▴ 980
0
votes
0
replies
43k
views
Answer: A: What Is The Quickest Algorithm For Range Overlap?
7.3 years ago by endrebak ▴ 980
1
vote
0
replies
3.5k
views
Comment: C: (pre-alpha) pyranges: performant, pythonic GenomicRanges
7.3 years ago by endrebak ▴ 980
0
votes
1
reply
2.8k
views
Comment: C: Algorithms for finding nearest range given two lists of ranges?
7.3 years ago by endrebak ▴ 980
0
votes
0
replies
2.8k
views
Comment: C: Algorithms for finding nearest range given two lists of ranges?
7.3 years ago by endrebak ▴ 980
0
votes
0
replies
2.8k
views
Comment: C: Algorithms for finding nearest range given two lists of ranges?
7.3 years ago by endrebak ▴ 980
3
votes
8
replies
2.8k
views
Algorithms for finding nearest range given two lists of ranges?
algorithms
updated 2.3 years ago by 45k • written 7.4 years ago by ▴ 980
0
votes
0
replies
43k
views
Comment: C: What Is The Quickest Algorithm For Range Overlap?
7.4 years ago by endrebak ▴ 980
1
vote
1
reply
50k
views
Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
7.4 years ago by endrebak ▴ 980
0
votes
0
replies
2.0k
views
Comment: C: pyncls not dead! The datastructure nested containment list (faster than interval
7.4 years ago by endrebak ▴ 980
133 results • Page 1 of 3
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