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Comment: C: What is acceptable contaminant levels for RNA-Seq mapping?
5.5 years ago by Anand Rao ▴ 650
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1.5k
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Comment: C: What is acceptable contaminant levels for RNA-Seq mapping?
5.5 years ago by Anand Rao ▴ 650
2
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5
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1.5k
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What is acceptable contaminant levels for RNA-Seq mapping?
RNA-Seq decontamination
5.5 years ago by Anand Rao ▴ 650
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Comment: C: Use HHblits to find homologs in multiple species ?
5.5 years ago by Anand Rao ▴ 650
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Comment: C: Use HHblits to find homologs in multiple species ?
5.5 years ago by Anand Rao ▴ 650
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3.5k
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Comment: C: Phylogenetic tree construction from MAFFT aligned large genome dataset ?
5.5 years ago by Anand Rao ▴ 650
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Answer: A: Phylogenetic tree construction from MAFFT aligned large genome dataset ?
5.5 years ago by Anand Rao ▴ 650
2
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4.4k
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Answer: A: Use HHblits to find homologs in multiple species ?
5.5 years ago by Anand Rao ▴ 650
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1.0k
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Tools for mRNA-Seq time series DGE GCN and other analyses
time-course RNA-Seq time-series
updated 2.4 years ago by 45k • written 5.5 years ago by ▴ 650
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1.5k
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Answer: C: fastq file sub-sampling during per position quality score graphing
5.5 years ago by Anand Rao ▴ 650
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1.5k
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Comment: C: fastq file sub-sampling during per position quality score graphing
5.5 years ago by Anand Rao ▴ 650
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3
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1.5k
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fastq file sub-sampling during per position quality score graphing
FASTX_Toolkit FastQC
5.5 years ago by Anand Rao ▴ 650
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5
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5.7k
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7 follow
map gene gain loss on species tree
gene-tree tree reconciliation species
updated 3.0 years ago by ▴ 440 • written 10.1 years ago by ▴ 650
5
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8.8k
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Answer: A: rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
5.7 years ago by Anand Rao ▴ 650
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2
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7.7k
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Comment: C: How to score a multiple sequence alignment (MSA)?
updated 5.9 years ago by 45k • written 9.8 years ago by ▴ 650
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8.8k
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Comment: C: rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
5.9 years ago by Anand Rao ▴ 650
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3.9k
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Answer: A: Map PDB match coords to Pfam protein domain
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 650
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1
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2.7k
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Comment: C: Ideal sequence % identity for profile construction
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 650
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1
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11k
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Comment: C: Determining best MCL inflation factor
updated 5.9 years ago by 45k • written 9.9 years ago by ▴ 650
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2.8k
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Comment: C: BBmap pipeline output varies across replicated runs
6.0 years ago by Anand Rao ▴ 650
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1
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42k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.0 years ago by Anand Rao ▴ 650
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2.8k
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Comment: C: BBmap pipeline output varies across replicated runs
6.0 years ago by Anand Rao ▴ 650
0
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1
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42k
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Comment: C: Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files. And remov
6.0 years ago by Anand Rao ▴ 650
1
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2
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2.8k
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Answer: A: BBmap pipeline output varies across replicated runs
6.0 years ago by Anand Rao ▴ 650
6
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10
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2.8k
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BBmap pipeline output varies across replicated runs
bbmap reproducibility clumpify
6.0 years ago by Anand Rao ▴ 650
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0
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2.8k
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Comment: C: BBmap pipeline output varies across replicated runs
6.0 years ago by Anand Rao ▴ 650
2
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1
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4.5k
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Comment: C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
6.0 years ago by Anand Rao ▴ 650
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1
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2.8k
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Comment: C: BBmap pipeline output varies across replicated runs
6.1 years ago by Anand Rao ▴ 650
0
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1
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2.8k
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Comment: C: BBmap pipeline output varies across replicated runs
6.1 years ago by Anand Rao ▴ 650
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5.3k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
6.1 years ago by Anand Rao ▴ 650
1
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1
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5.3k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
6.1 years ago by Anand Rao ▴ 650
10
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8
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5.3k
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STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
STAR RNA-Seq mapping
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 650
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5.3k
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Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
6.1 years ago by Anand Rao ▴ 650
2
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0
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1.2k
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Answer: C: List of plant long read genome assemblies
6.1 years ago by Anand Rao ▴ 650
2
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2
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1.2k
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List of plant long read genome assemblies
plant genome long read Assembly
6.1 years ago by Anand Rao ▴ 650
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0
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6.6k
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Comment: C: Erorr running HHblits
6.3 years ago by Anand Rao ▴ 650
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0
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6.6k
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Comment: C: Erorr running HHblits
6.3 years ago by Anand Rao ▴ 650
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2
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2.9k
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Comment: C: HHpred installation problem
6.3 years ago by Anand Rao ▴ 650
1
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2
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1.7k
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Multiple sequence alignment statistics
MSA statistics
updated 6.3 years ago by 20 • written 6.4 years ago by ▴ 650
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1
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3.2k
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Comment: C: Using row order of one heatmap for a new heatmap
6.3 years ago by Anand Rao ▴ 650
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3
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3.2k
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Using row order of one heatmap for a new heatmap
Heatmap R row reorder plot
6.3 years ago by Anand Rao ▴ 650
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0
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1.8k
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Comment: C: How can I perform pairwise comparison of protein secondary structure?
6.3 years ago by Anand Rao ▴ 650
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1.8k
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Comment: C: How can I perform pairwise comparison of protein secondary structure?
6.3 years ago by Anand Rao ▴ 650
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8
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1.8k
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How can I perform pairwise comparison of protein secondary structure?
secondary structure protein structure alignment
updated 6.3 years ago by ★ 30k • written 6.3 years ago by ▴ 650
3
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1
reply
1.7k
views
Evaluating protein structure predictions
protein structure evaluation ProQ QMEAN
updated 6.3 years ago by ▴ 390 • written 6.4 years ago by ▴ 650
1
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0
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34k
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Comment: C: HISAT2 V.S. STAR
6.3 years ago by Anand Rao ▴ 650
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1
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34k
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Comment: C: HISAT2 V.S. STAR
6.3 years ago by Anand Rao ▴ 650
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1
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1.5k
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RepeatModeler contig size filter and parallelization
RepeatModeler Contig length Parallel
6.6 years ago by Anand Rao ▴ 650
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0
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1.5k
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Answer: A: RepeatModeler contig size filter and parallelization
6.6 years ago by Anand Rao ▴ 650
0
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0
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1.9k
views
RepeatModeler run error troubleshooting
RepeatModeler RepeatMasker BuildDatabase blastdb
6.6 years ago by Anand Rao ▴ 650
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