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14
votes
7
replies
4.4k
views
6 follow
rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rRNA intron RNA-Seq bbsuite sormeRNA
updated 3 months ago by 130k • written 3.5 years ago by ▴ 560
0
votes
0
replies
202
views
off-target predictions to prioritize list of sgRNA designs
sgRNA CRISPR CHOPCHOP
14 months ago by Anand Rao ▴ 560
0
votes
0
replies
1.7k
views
Comment: Comment: PDB file pairwise alignment software choice
18 months ago by Anand Rao ▴ 560
0
votes
1
reply
1.7k
views
Comment: Comment: PDB file pairwise alignment software choice
18 months ago by Anand Rao ▴ 560
6
votes
5
replies
1.7k
views
PDB file pairwise alignment software choice
structure pairwise parsing alignment classification
updated 16 months ago by ▴ 10 • written 18 months ago by ▴ 560
6
votes
6
replies
2.4k
views
bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
BBMap BBduk flags
updated 19 months ago by ▴ 30 • written 3.6 years ago by ▴ 560
3
votes
1
reply
832
views
Answer: Answer: pseudogenes and their parent gene common regions
21 months ago by Anand Rao ▴ 560
0
votes
0
replies
841
views
Comment: Comment: FASTQ headers need additional info?
22 months ago by Anand Rao ▴ 560
0
votes
0
replies
841
views
Comment: Comment: FASTQ headers need additional info?
22 months ago by Anand Rao ▴ 560
0
votes
4
replies
841
views
FASTQ headers need additional info?
format FASTQ
22 months ago by Anand Rao ▴ 560
0
votes
1
reply
884
views
Comment: Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
2.2 years ago by Anand Rao ▴ 560
1
vote
3
replies
884
views
Testing independence between 5' and 3' terminal sequences in a DNA database
sequence cluster DNA independence testing
updated 2.2 years ago by 98k • written 2.2 years ago by ▴ 560
0
votes
0
replies
590
views
Comment: Comment: Identification of protein domain encoding multi-exon genomic intervals
2.2 years ago by Anand Rao ▴ 560
0
votes
2
replies
590
views
Identification of protein domain encoding multi-exon genomic intervals
geneprediction
2.2 years ago by Anand Rao ▴ 560
0
votes
0
replies
612
views
Identifying truncated protein domain encoding DNA sequences
protein domain truncation AUGUSTUS fastBlockSearch
2.7 years ago by Anand Rao ▴ 560
0
votes
0
replies
1.7k
views
Comment: C: TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
2.7 years ago by Anand Rao ▴ 560
0
votes
0
replies
2.0k
views
Comment: C: SizeFactors for BAM normalization
2.8 years ago by Anand Rao ▴ 560
0
votes
1
reply
2.0k
views
Comment: C: SizeFactors for BAM normalization
2.8 years ago by Anand Rao ▴ 560
0
votes
0
replies
2.0k
views
Comment: C: SizeFactors for BAM normalization
2.8 years ago by Anand Rao ▴ 560
0
votes
1
reply
2.0k
views
Comment: C: SizeFactors for BAM normalization
2.8 years ago by Anand Rao ▴ 560
11
votes
8
replies
2.0k
views
SizeFactors for BAM normalization
deepTools bamCoverage sizeFactors DESeq2
updated 2.9 years ago by 103k • written 2.9 years ago by ▴ 560
0
votes
1
reply
5.4k
views
Comment: C: Time Course RNA-Seq
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
3.2k
views
Comment: C: How to find the differences in aligned bam files
2.9 years ago by Anand Rao ▴ 560
0
votes
1
reply
3.2k
views
Comment: C: How to find the differences in aligned bam files
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
1.7k
views
Comment: C: TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
2.9 years ago by Anand Rao ▴ 560
0
votes
2
replies
16k
views
Comment: C: Is there a tool that sorts gtf files?
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
925
views
Comment: C: Standardizing 3rd party GFF3 file
2.9 years ago by Anand Rao ▴ 560
0
votes
1
reply
925
views
Comment: C: Standardizing 3rd party GFF3 file
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
1.8k
views
Comment: C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
2.9 years ago by Anand Rao ▴ 560
3
votes
4
replies
925
views
Standardizing 3rd party GFF3 file
GFF3 format validation
2.9 years ago by Anand Rao ▴ 560
0
votes
1
reply
3.2k
views
Comment: C: How to find the differences in aligned bam files
2.9 years ago by Anand Rao ▴ 560
0
votes
2
replies
3.2k
views
Comment: C: How to find the differences in aligned bam files
2.9 years ago by Anand Rao ▴ 560
12
votes
11
replies
2.5k
views
interpreting GC-bias compute and correct results from DeepTools
GC-bias deepTools
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
2.5k
views
Answer: A: interpreting GC-bias compute and correct results from DeepTools
2.9 years ago by Anand Rao ▴ 560
1
vote
0
replies
2.5k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
2.9 years ago by Anand Rao ▴ 560
0
votes
1
reply
2.5k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
2.5k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
2.9 years ago by Anand Rao ▴ 560
0
votes
1
reply
2.5k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
2.9 years ago by Anand Rao ▴ 560
0
votes
1
reply
2.5k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
updated 2.9 years ago by 73k • written 2.9 years ago by ▴ 560
0
votes
1
reply
2.7k
views
Comment: C: How to merge gff3 files?
2.9 years ago by Anand Rao ▴ 560
0
votes
0
replies
1.8k
views
Comment: C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
3.0 years ago by Anand Rao ▴ 560
0
votes
0
replies
1.4k
views
Answer: A: How to remove reads with only Ns from bam/sam/cram file?
3.0 years ago by Anand Rao ▴ 560
2
votes
2
replies
1.8k
views
Answer: A: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
3.0 years ago by Anand Rao ▴ 560
4
votes
7
replies
1.8k
views
Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts' outfile
BAM featureCounts Picard ValidateSamFile
3.0 years ago by Anand Rao ▴ 560
0
votes
1
reply
1.8k
views
Comment: C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
3.0 years ago by Anand Rao ▴ 560
0
votes
0
replies
3.6k
views
Comment: C: GC-BIAS correction for BAM file
3.0 years ago by Anand Rao ▴ 560
0
votes
0
replies
3.9k
views
Comment: C: Running STAR with --twopassMode Basic
3.0 years ago by Anand Rao ▴ 560
0
votes
1
reply
3.9k
views
Comment: C: Running STAR with --twopassMode Basic
3.0 years ago by Anand Rao ▴ 560
0
votes
0
replies
736
views
Comment: C: What is acceptable contaminant levels for RNA-Seq mapping?
3.1 years ago by Anand Rao ▴ 560
0
votes
1
reply
736
views
Comment: C: What is acceptable contaminant levels for RNA-Seq mapping?
3.1 years ago by Anand Rao ▴ 560
214 results • Page 1 of 5
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