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947
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Comment: Comment: Finding insert sequences using long reads
3 months ago by Anand Rao ▴ 640
2
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5
replies
2.8k
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primer design to discriminate sequences in intron-exon MSA
primer MSA intron-exon
updated 3 months ago by • 0 • written 6.9 years ago by ▴ 640
16
votes
7
replies
6.5k
views
6 follow
rRNA decontamination of RNA-Seq reads (tool choice, introns etc)
rRNA intron RNA-Seq bbsuite sormeRNA
updated 17 months ago by 144k • written 4.7 years ago by ▴ 640
0
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0
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371
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off-target predictions to prioritize list of sgRNA designs
sgRNA CRISPR CHOPCHOP
2.3 years ago by Anand Rao ▴ 640
0
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0
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2.6k
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Comment: Comment: PDB file pairwise alignment software choice
2.7 years ago by Anand Rao ▴ 640
0
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1
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2.6k
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Comment: Comment: PDB file pairwise alignment software choice
2.7 years ago by Anand Rao ▴ 640
6
votes
5
replies
2.6k
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PDB file pairwise alignment software choice
structure pairwise parsing alignment classification
updated 2.5 years ago by ▴ 10 • written 2.7 years ago by ▴ 640
6
votes
6
replies
3.4k
views
bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
BBMap BBduk flags
updated 2.7 years ago by ▴ 30 • written 4.8 years ago by ▴ 640
4
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1
reply
1.2k
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Answer: Answer: pseudogenes and their parent gene common regions
2.9 years ago by Anand Rao ▴ 640
0
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0
replies
1.3k
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Comment: Comment: FASTQ headers need additional info?
3.0 years ago by Anand Rao ▴ 640
0
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0
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1.3k
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Comment: Comment: FASTQ headers need additional info?
3.0 years ago by Anand Rao ▴ 640
0
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4
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1.3k
views
FASTQ headers need additional info?
format FASTQ
3.0 years ago by Anand Rao ▴ 640
0
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1
reply
1.2k
views
Comment: Comment: Testing independence between 5' and 3' terminal sequences in a DNA database
3.3 years ago by Anand Rao ▴ 640
1
vote
3
replies
1.2k
views
Testing independence between 5' and 3' terminal sequences in a DNA database
sequence cluster DNA independence testing
updated 3.3 years ago by 101k • written 3.3 years ago by ▴ 640
0
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0
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807
views
Comment: Comment: Identification of protein domain encoding multi-exon genomic intervals
3.3 years ago by Anand Rao ▴ 640
0
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2
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807
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Identification of protein domain encoding multi-exon genomic intervals
geneprediction
3.3 years ago by Anand Rao ▴ 640
0
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0
replies
797
views
Identifying truncated protein domain encoding DNA sequences
protein domain truncation AUGUSTUS fastBlockSearch
3.8 years ago by Anand Rao ▴ 640
0
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0
replies
2.3k
views
Comment: C: TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
3.8 years ago by Anand Rao ▴ 640
0
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0
replies
2.9k
views
Comment: C: SizeFactors for BAM normalization
4.0 years ago by Anand Rao ▴ 640
0
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1
reply
2.9k
views
Comment: C: SizeFactors for BAM normalization
4.0 years ago by Anand Rao ▴ 640
0
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0
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2.9k
views
Comment: C: SizeFactors for BAM normalization
4.0 years ago by Anand Rao ▴ 640
0
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1
reply
2.9k
views
Comment: C: SizeFactors for BAM normalization
4.0 years ago by Anand Rao ▴ 640
12
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8
replies
2.9k
views
SizeFactors for BAM normalization
deepTools bamCoverage sizeFactors DESeq2
updated 4.0 years ago by 104k • written 4.0 years ago by ▴ 640
0
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1
reply
6.3k
views
Comment: C: Time Course RNA-Seq
4.0 years ago by Anand Rao ▴ 640
0
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0
replies
4.1k
views
Comment: C: How to find the differences in aligned bam files
4.0 years ago by Anand Rao ▴ 640
0
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1
reply
4.1k
views
Comment: C: How to find the differences in aligned bam files
4.0 years ago by Anand Rao ▴ 640
0
votes
0
replies
2.3k
views
Comment: C: TIN from RSEQC calculated for BAM file using RAW or PROCESSED reads?
4.0 years ago by Anand Rao ▴ 640
0
votes
2
replies
23k
views
Comment: C: Is there a tool that sorts gtf files?
4.0 years ago by Anand Rao ▴ 640
0
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0
replies
1.3k
views
Comment: C: Standardizing 3rd party GFF3 file
4.0 years ago by Anand Rao ▴ 640
0
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1
reply
1.3k
views
Comment: C: Standardizing 3rd party GFF3 file
4.0 years ago by Anand Rao ▴ 640
0
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0
replies
2.5k
views
Comment: C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
4.0 years ago by Anand Rao ▴ 640
3
votes
4
replies
1.3k
views
Standardizing 3rd party GFF3 file
GFF3 format validation
4.0 years ago by Anand Rao ▴ 640
0
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1
reply
4.1k
views
Comment: C: How to find the differences in aligned bam files
4.1 years ago by Anand Rao ▴ 640
0
votes
2
replies
4.1k
views
Comment: C: How to find the differences in aligned bam files
4.1 years ago by Anand Rao ▴ 640
13
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11
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3.6k
views
interpreting GC-bias compute and correct results from DeepTools
GC-bias deepTools
4.1 years ago by Anand Rao ▴ 640
0
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0
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3.6k
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Answer: A: interpreting GC-bias compute and correct results from DeepTools
4.1 years ago by Anand Rao ▴ 640
1
vote
0
replies
3.6k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
4.1 years ago by Anand Rao ▴ 640
0
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1
reply
3.6k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
4.1 years ago by Anand Rao ▴ 640
0
votes
0
replies
3.6k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
4.1 years ago by Anand Rao ▴ 640
0
votes
1
reply
3.6k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
4.1 years ago by Anand Rao ▴ 640
0
votes
1
reply
3.6k
views
Comment: C: interpreting GC-bias compute and correct results from DeepTools
updated 4.1 years ago by 84k • written 4.1 years ago by ▴ 640
0
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1
reply
3.7k
views
Comment: C: How to merge gff3 files?
4.1 years ago by Anand Rao ▴ 640
0
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0
replies
2.5k
views
Comment: C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
4.1 years ago by Anand Rao ▴ 640
0
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0
replies
1.9k
views
Answer: A: How to remove reads with only Ns from bam/sam/cram file?
4.1 years ago by Anand Rao ▴ 640
4
votes
7
replies
2.5k
views
Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts' outfile
BAM featureCounts Picard ValidateSamFile
4.1 years ago by Anand Rao ▴ 640
2
votes
2
replies
2.5k
views
Answer: A: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
4.1 years ago by Anand Rao ▴ 640
0
votes
1
reply
2.5k
views
Comment: C: Fixing BAM file errors reported by Picard ValidateSamFile, and in featureCounts'
4.1 years ago by Anand Rao ▴ 640
0
votes
0
replies
4.1k
views
Comment: C: GC-BIAS correction for BAM file
4.1 years ago by Anand Rao ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: Running STAR with --twopassMode Basic
4.1 years ago by Anand Rao ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: Running STAR with --twopassMode Basic
4.1 years ago by Anand Rao ▴ 640
215 results • Page 1 of 5
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