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10
votes
2
replies
3.3k
views
Where can I download some example BAM files?
ngs bam
updated 3.6 years ago by 11k • written 3.6 years ago by ▴ 740
0
votes
0
replies
3.1k
views
Comment: Comment: can't run Aracne -- Java error
4.4 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
25k
views
Answer: Answer: HISAT error: Encountered internal HISAT2 exception (#1)
4.6 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
1.8k
views
Comment: C: Metabolomics / Transcriptomics dataset?
5.0 years ago by Federico Giorgi ▴ 740
1
vote
3
replies
1.8k
views
Metabolomics / Transcriptomics dataset?
RNA-Seq metabolomics transcriptomics dataset
updated 5.0 years ago by 3.9k • written 5.0 years ago by ▴ 740
4
votes
0
replies
919
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 2.4 years ago by 45k • written 5.8 years ago by ▴ 740
5
votes
1
reply
12k
views
Answer: A: Blast Output With Species Name
updated 5.9 years ago by 45k • written 12.0 years ago by ▴ 740
0
votes
1
reply
5.5k
views
Answer: A: How Can I Run Estscan2 (Perl)
updated 5.9 years ago by 45k • written 14.0 years ago by ▴ 740
1
vote
2
replies
1.5k
views
Consensus sequence from multiple BAM files on a single position
samtools bam mpileup
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by ▴ 740
3
votes
1
reply
27k
views
Answer: A: Vertebrate Subset Nr Database? Build My Own?
updated 6.1 years ago by 45k • written 11.7 years ago by ▴ 740
0
votes
0
replies
189k
views
Comment: C: How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
updated 6.4 years ago by 45k • written 12.6 years ago by ▴ 740
1
vote
0
replies
9.6k
views
Answer: Answer: Parsing Ace File To Fasta Formated Alignement
updated 24 months ago by 45k • written 14.0 years ago by ▴ 740
0
votes
0
replies
2.4k
views
Comment: C: Show RNASeq coverage distribution over transcript length
7.3 years ago by Federico Giorgi ▴ 740
1
vote
2
replies
2.4k
views
Show RNASeq coverage distribution over transcript length
RNA-Seq BAM sequencing Transcriptomics
updated 7.3 years ago by 9.0k • written 7.3 years ago by ▴ 740
2
votes
1
reply
3.3k
views
Answer: A: question about DiffBind
7.4 years ago by Federico Giorgi ▴ 740
15
votes
3
replies
59k
views
Answer: A: How To Download All Sra Samples At Once ?
7.4 years ago by Federico Giorgi ▴ 740
1
vote
1
reply
3.1k
views
Answer: A: how to find new transcript from bam file?
7.4 years ago by Federico Giorgi ▴ 740
0
votes
1
reply
16k
views
Answer: A: download from SRA
7.5 years ago by Federico Giorgi ▴ 740
5
votes
2
replies
2.4k
views
SNP/indel annotation in Arabidopsis
arabidopsis SNP indel varscan
updated 7.5 years ago by 16k • written 7.5 years ago by ▴ 740
4
votes
5
replies
4.5k
views
Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
r rna
updated 7.7 years ago by 20 • written 13.6 years ago by ▴ 740
39
votes
17
replies
46k
views
13 follow
Extract Cds Fastas From A Gff Annotation + Reference Sequence
gff CDS
updated 2.7 years ago by 45k • written 13.4 years ago by ▴ 740
1
vote
0
replies
12k
views
Answer: A: Co-Expression Networks Of Rna-Seq
11.9 years ago by Federico Giorgi ▴ 740
6
votes
4
replies
12k
views
Blast Output With Species Name
blast metagenomics
12.0 years ago by Federico Giorgi ▴ 740
2
votes
1
reply
20k
views
Answer: A: Bowtie & Tophat
12.5 years ago by Federico Giorgi ▴ 740
3
votes
4
replies
2.8k
views
Running Tophat2 On Two Joined Genomes
tophat2 rnaseq bowtie bowtie2
updated 12.5 years ago by ▴ 10 • written 12.5 years ago by ▴ 740
0
votes
1
reply
2.8k
views
Comment: C: Running Tophat2 On Two Joined Genomes
12.5 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
9.2k
views
Comment: C: How Fundamental Is The 4 Gb Size Limit For Building Burrows-Wheeler Indices
12.5 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
13k
views
Comment: C: Hg19 Gene Annotation With Tophat/Cufflinks
12.9 years ago by Federico Giorgi ▴ 740
2
votes
0
replies
6.6k
views
Answer: A: Fold Change Detection In Affymetrix Microarray Data Without Replicates
13.1 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
3.3k
views
Comment: C: Custom Cdf Pipeline
13.3 years ago by Federico Giorgi ▴ 740
1
vote
1
reply
3.1k
views
Comment: C: Basic Question : #Reads Used By Tophat
13.3 years ago by Federico Giorgi ▴ 740
4
votes
0
replies
6.0k
views
Comment: C: How Are Transposable Elements Marked In A Genome?
13.3 years ago by Federico Giorgi ▴ 740
0
votes
2
replies
3.3k
views
Custom Cdf Pipeline
microarray annotation
updated 13.3 years ago by ▴ 670 • written 13.3 years ago by ▴ 740
6
votes
1
reply
46k
views
Answer: A: Extract Cds Fastas From A Gff Annotation + Reference Sequence
13.4 years ago by Federico Giorgi ▴ 740
0
votes
1
reply
46k
views
Comment: C: Extract Cds Fastas From A Gff Annotation + Reference Sequence
13.4 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
4.5k
views
Answer: A: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
13.6 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
4.5k
views
Comment: C: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
13.6 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
4.5k
views
Comment: C: Differential Expression Analysis On Rpkms - Contrasts And Contrasts Of Contrasts
13.6 years ago by Federico Giorgi ▴ 740
1
vote
0
replies
3.0k
views
Gene To Goslim Mapping
gene r bioconductor
13.7 years ago by Federico Giorgi ▴ 740
7
votes
7
replies
3.4k
views
Gbrowse2 Mysql Indexing
mysql
updated 13.9 years ago by ▴ 770 • written 13.9 years ago by ▴ 740
0
votes
0
replies
3.4k
views
Comment: C: Gbrowse2 Mysql Indexing
13.9 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
3.4k
views
Comment: C: Gbrowse2 Mysql Indexing
13.9 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
3.4k
views
Comment: C: Gbrowse2 Mysql Indexing
13.9 years ago by Federico Giorgi ▴ 740
0
votes
0
replies
13k
views
Answer: A: Normalize Large Number Of Cel Files
14.0 years ago by Federico Giorgi ▴ 740
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