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6
votes
9
replies
6.1k
views
6 follow
Extract parts of reads from BAM file that overlap a specific region of genome
bam sequencing alignment
updated 3.2 years ago by ★ 2.7k • written 8.3 years ago by ▴ 110
1
vote
3
replies
2.3k
views
VEP cache trancript versions
vep annotation NGS sequencing dna-seq
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 110
0
votes
0
replies
2.3k
views
Comment: C: VEP cache trancript versions
5.2 years ago by Chadi Saad ▴ 110
5
votes
2
replies
87k
views
Answer: A: BAM/SAM to FASTA conversion
updated 5.7 years ago by 89k • written 8.2 years ago by ▴ 110
0
votes
0
replies
3.7k
views
Comment: C: BWA not reporting all similar alignments
5.9 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.7k
views
Comment: C: BWA not reporting all similar alignments
5.9 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.7k
views
Comment: C: BWA not reporting all similar alignments
updated 5.9 years ago by 35k • written 5.9 years ago by ▴ 110
0
votes
1
reply
3.7k
views
Comment: C: BWA not reporting all similar alignments
5.9 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.7k
views
Comment: C: BWA not reporting all similar alignments
5.9 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.7k
views
Comment: C: BWA not reporting all similar alignments
5.9 years ago by Chadi Saad ▴ 110
3
votes
12
replies
3.7k
views
BWA not reporting all similar alignments
alignment next-gen bwa bam
5.9 years ago by Chadi Saad ▴ 110
0
votes
2
replies
1.4k
views
Question about deduplication with UMI-tools
sequencing umi deduplication
updated 6.2 years ago by 22k • written 6.2 years ago by ▴ 110
0
votes
1
reply
2.8k
views
Bcftools merge sample order
vcf dna multisample bcftools htslib
updated 6.9 years ago by ▴ 160 • written 6.9 years ago by ▴ 110
1
vote
0
replies
3.4k
views
Answer: A: Filter multisample vcf for denovo variant
6.9 years ago by Chadi Saad ▴ 110
0
votes
0
replies
2.7k
views
Comment: C: Sub sampling bam files (dilution)
8.0 years ago by Chadi Saad ▴ 110
0
votes
1
reply
2.7k
views
Comment: C: Sub sampling bam files (dilution)
8.0 years ago by Chadi Saad ▴ 110
0
votes
0
replies
2.7k
views
Comment: C: Sub sampling bam files (dilution)
8.0 years ago by Chadi Saad ▴ 110
0
votes
6
replies
2.7k
views
Sub sampling bam files (dilution)
bam alignment ngs
8.0 years ago by Chadi Saad ▴ 110
2
votes
4
replies
2.6k
views
How can I right align InDels ?
alignment
updated 8.0 years ago by 20 • written 8.2 years ago by ▴ 110
0
votes
1
reply
1.9k
views
Comment: C: realignement around Indels
8.2 years ago by Chadi Saad ▴ 110
1
vote
3
replies
1.9k
views
realignement around Indels
alignment
8.2 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.0k
views
Comment: C: Count mismatchs/Indel number per position in BAM file ?
8.2 years ago by Chadi Saad ▴ 110
5
votes
6
replies
3.0k
views
Count mismatchs/Indel number per position in BAM file ?
alignment
updated 8.2 years ago by 166k • written 8.2 years ago by ▴ 110
1
vote
0
replies
9.0k
views
Answer: A: Need help : cut the fasta sequences from a specific region
8.2 years ago by Chadi Saad ▴ 110
0
votes
1
reply
2.6k
views
Comment: C: How can I right align InDels ?
8.2 years ago by Chadi Saad ▴ 110
0
votes
0
replies
33k
views
Comment: C: Extract Alignment From Very Large Bam File
8.3 years ago by Chadi Saad ▴ 110
0
votes
1
reply
6.1k
views
Comment: C: Extract parts of reads from BAM file that overlap a specific region of genome
8.3 years ago by Chadi Saad ▴ 110
0
votes
2
replies
6.1k
views
Comment: C: Extract parts of reads from BAM file that overlap a specific region of genome
8.3 years ago by Chadi Saad ▴ 110
0
votes
0
replies
3.2k
views
Comment: C: DNA sequences degeneration
9.3 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.2k
views
Comment: C: DNA sequences degeneration
9.3 years ago by Chadi Saad ▴ 110
0
votes
9
replies
3.2k
views
DNA sequences degeneration
DNA motif IUAPC
updated 9.3 years ago by 20k • written 9.3 years ago by ▴ 110
0
votes
1
reply
7.6k
views
Comment: C: How To Merge Consensus Motif To Degenerate Motif ? [Motif Merge Or Motif Cluster
9.3 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.2k
views
Comment: C: DNA sequences degeneration
9.3 years ago by Chadi Saad ▴ 110
0
votes
1
reply
3.2k
views
Comment: C: DNA sequences degeneration
9.3 years ago by Chadi Saad ▴ 110
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