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Comment: Comment: genefu for PAM50 prediction
2 days ago by hamarillo ▴ 70
1
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2
replies
529
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ENCODE Hi-C FASTQ files are SINGLE end
fastq layout ENCODE Hi-C
updated 19 days ago by • 0 • written 6 weeks ago by ▴ 70
0
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0
replies
112
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Merging Hi-C datasets originating from experiments using different enzymes
enzymes Hi-C
updated 23 days ago by 43k • written 23 days ago by ▴ 70
1
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0
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529
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Answer: Answer: ENCODE Hi-C FASTQ files are SINGLE end
5 weeks ago by hamarillo ▴ 70
3
votes
3
replies
794
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Docker image to use Rscript
snakemake docker Rscript
6 months ago by hamarillo ▴ 70
1
vote
0
replies
794
views
Answer: Answer: Docker image to use Rscript
6 months ago by hamarillo ▴ 70
1
vote
2
replies
486
views
sequencing machines output files layout
layout FASTQ sequencing
updated 7 months ago by 141k • written 7 months ago by ▴ 70
0
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1
reply
399
views
How many FASTQ files does one SRA Run correspond to?
fastq sra
updated 7 months ago by 43k • written 7 months ago by ▴ 70
2
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1
reply
427
views
Analytical criteria to say a transcript is expressed in single-cell
counts scRNA-seq single-cell expression-matrix
updated 11 months ago by 43k • written 11 months ago by ▴ 70
6
votes
3
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817
views
trimmomatic and STAR alignments
trimmomatic STAR RNAseq sequencing reads
updated 11 months ago by ▴ 140 • written 12 months ago by ▴ 70
0
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1
reply
506
views
Difference between sratools and sratoolkit
sratoolkit sratools sra sequencing fastq
updated 10 months ago by 43k • written 12 months ago by ▴ 70
0
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0
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669
views
valid UMIs in STARsolo output?
starsolo single-cell UMIs RNA-seq
22 months ago by hamarillo ▴ 70
1
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1
reply
921
views
Seurat dotplot
seurat features dotplot variable markers
updated 2.0 years ago by ▴ 390 • written 2.0 years ago by ▴ 70
4
votes
2
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581
views
Should one use cell cycle regression on single-cell data from PBMCs?
cycle regression cell single PBMCs Seurat
updated 2.0 years ago by 81k • written 2.0 years ago by ▴ 70
4
votes
1
reply
617
views
snakemake rule ambiguity
ambiguity snakemake
updated 2.1 years ago by ★ 1.9k • written 2.1 years ago by ▴ 70
1
vote
1
reply
2.4k
views
Seurat object data vs counts
seurat
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 70
0
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1
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2.2k
views
Comment: Comment: scRNA-seq: Which is the best method for computing the % of similarity between tw
2.3 years ago by hamarillo ▴ 70
1
vote
1
reply
590
views
What happens to the outputs when you update the rule's conda environment
conda snakemake environment
updated 2.3 years ago by ★ 2.1k • written 2.3 years ago by ▴ 70
0
votes
1
reply
786
views
Identification of cell types/groups in single-cell data
cell single type clustering
updated 2.6 years ago by ▴ 90 • written 2.6 years ago by ▴ 70
0
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2
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6.9k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
2.6 years ago by hamarillo ▴ 70
12
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7
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6.9k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 24 days ago by ★ 5.8k • written 2.6 years ago by ▴ 70
1
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0
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676
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Answer: Answer: Human tissue expression dataset except GTEx
2.6 years ago by hamarillo ▴ 70
4
votes
2
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853
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how do bioinformatic pipelines take into account different sequencing technologies?
pipelines snakemake design technology sequencing
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 70
0
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2
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2.2k
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worm base genes biomaRt filter
wormbase biomart
updated 7.7 years ago by ★ 4.9k • written 7.7 years ago by ▴ 70
0
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0
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2.5k
views
Comment: C: different positions for a gene
7.7 years ago by hamarillo ▴ 70
4
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3
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2.5k
views
different positions for a gene
biomaRt entrez start_position ensembl
updated 7.7 years ago by 47k • written 7.7 years ago by ▴ 70
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