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0
votes
1
reply
317
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Answer:
Answer: Hi-C interactions significance
8 weeks ago by
hamarillo
▴ 80
13
votes
8
replies
11k
views
Differences between SMART-seq2, SMART-seq3, and 10x
10x
UMI
smartseq
single-cell
updated 10 weeks ago by
Ram
44k • written 3.4 years ago by
hamarillo
▴ 80
1
vote
0
replies
11k
views
Comment:
Comment: error report:while running fastq-dump
6 months ago by
hamarillo
▴ 80
5
votes
3
replies
576
views
temp directory as output in snakemake
directory
temp
snakemake
updated 6 months ago by
Jesse
▴ 850 • written 6 months ago by
hamarillo
▴ 80
0
votes
0
replies
3.2k
views
Comment:
Comment: genefu for PAM50 prediction
9 months ago by
hamarillo
▴ 80
1
vote
2
replies
1.0k
views
ENCODE Hi-C FASTQ files are SINGLE end
fastq
layout
ENCODE
Hi-C
updated 10 months ago by
Yihang
• 0 • written 11 months ago by
hamarillo
▴ 80
0
votes
0
replies
232
views
Merging Hi-C datasets originating from experiments using different enzymes
enzymes
Hi-C
updated 10 months ago by
Ram
44k • written 10 months ago by
hamarillo
▴ 80
1
vote
0
replies
1.0k
views
Answer:
Answer: ENCODE Hi-C FASTQ files are SINGLE end
11 months ago by
hamarillo
▴ 80
3
votes
3
replies
1.3k
views
Docker image to use Rscript
snakemake
docker
Rscript
15 months ago by
hamarillo
▴ 80
1
vote
0
replies
1.3k
views
Answer:
Answer: Docker image to use Rscript
15 months ago by
hamarillo
▴ 80
1
vote
2
replies
805
views
sequencing machines output files layout
layout
FASTQ
sequencing
updated 17 months ago by
GenoMax
149k • written 17 months ago by
hamarillo
▴ 80
0
votes
1
reply
556
views
How many FASTQ files does one SRA Run correspond to?
fastq
sra
updated 17 months ago by
Ram
44k • written 17 months ago by
hamarillo
▴ 80
2
votes
1
reply
606
views
Analytical criteria to say a transcript is expressed in single-cell
counts
scRNA-seq
single-cell
expression-matrix
updated 20 months ago by
Ram
44k • written 20 months ago by
hamarillo
▴ 80
6
votes
3
replies
1.2k
views
trimmomatic and STAR alignments
trimmomatic
STAR
RNAseq
sequencing
reads
updated 21 months ago by
stuart archer
▴ 140 • written 22 months ago by
hamarillo
▴ 80
0
votes
1
reply
625
views
Difference between sratools and sratoolkit
sratoolkit
sratools
sra
sequencing
fastq
updated 19 months ago by
Ram
44k • written 22 months ago by
hamarillo
▴ 80
0
votes
0
replies
811
views
valid UMIs in STARsolo output?
starsolo
single-cell
UMIs
RNA-seq
2.7 years ago by
hamarillo
▴ 80
1
vote
1
reply
1.2k
views
Seurat dotplot
seurat
features
dotplot
variable
markers
updated 2.8 years ago by
tomas4482
▴ 430 • written 2.8 years ago by
hamarillo
▴ 80
4
votes
2
replies
747
views
Should one use cell cycle regression on single-cell data from PBMCs?
cycle
regression
cell
single
PBMCs
Seurat
updated 2.8 years ago by
ATpoint
86k • written 2.8 years ago by
hamarillo
▴ 80
4
votes
1
reply
792
views
snakemake rule ambiguity
ambiguity
snakemake
updated 2.9 years ago by
Wayne
★ 2.1k • written 2.9 years ago by
hamarillo
▴ 80
1
vote
1
reply
4.1k
views
Seurat object data vs counts
seurat
updated 3.0 years ago by
rpolicastro
13k • written 3.0 years ago by
hamarillo
▴ 80
0
votes
1
reply
3.0k
views
Comment:
Comment: scRNA-seq: Which is the best method for computing the % of similarity between tw
3.1 years ago by
hamarillo
▴ 80
1
vote
1
reply
718
views
What happens to the outputs when you update the rule's conda environment
conda
snakemake
environment
updated 3.1 years ago by
Eric Lim
★ 2.2k • written 3.1 years ago by
hamarillo
▴ 80
0
votes
1
reply
910
views
Identification of cell types/groups in single-cell data
cell
single
type
clustering
updated 3.4 years ago by
bigomics.team
▴ 90 • written 3.4 years ago by
hamarillo
▴ 80
0
votes
2
replies
11k
views
Comment:
Comment: Differences between SMART-seq2, SMART-seq3, and 10x
3.4 years ago by
hamarillo
▴ 80
1
vote
0
replies
842
views
Answer:
Answer: Human tissue expression dataset except GTEx
3.4 years ago by
hamarillo
▴ 80
4
votes
2
replies
1.0k
views
how do bioinformatic pipelines take into account different sequencing technologies?
pipelines
snakemake
design
technology
sequencing
updated 3.4 years ago by
GenoMax
149k • written 3.4 years ago by
hamarillo
▴ 80
0
votes
2
replies
2.4k
views
worm base genes biomaRt filter
wormbase
biomart
updated 8.5 years ago by
harold.smith.tarheel
★ 5.0k • written 8.5 years ago by
hamarillo
▴ 80
0
votes
0
replies
2.7k
views
Comment:
C: different positions for a gene
8.5 years ago by
hamarillo
▴ 80
4
votes
3
replies
2.7k
views
different positions for a gene
biomaRt
entrez
start_position
ensembl
updated 8.5 years ago by
WouterDeCoster
47k • written 8.5 years ago by
hamarillo
▴ 80
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