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ENCODE Hi-C FASTQ files are SINGLE end
fastq layout ENCODE Hi-C
updated 4 weeks ago by • 0 • written 8 weeks ago by ▴ 70
0
votes
0
replies
127
views
Merging Hi-C datasets originating from experiments using different enzymes
enzymes Hi-C
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 70
3
votes
3
replies
824
views
Docker image to use Rscript
snakemake docker Rscript
6 months ago by hamarillo ▴ 70
1
vote
2
replies
501
views
sequencing machines output files layout
layout FASTQ sequencing
updated 7 months ago by 141k • written 7 months ago by ▴ 70
0
votes
1
reply
406
views
How many FASTQ files does one SRA Run correspond to?
fastq sra
updated 7 months ago by 43k • written 7 months ago by ▴ 70
2
votes
1
reply
438
views
Analytical criteria to say a transcript is expressed in single-cell
counts scRNA-seq single-cell expression-matrix
updated 11 months ago by 43k • written 11 months ago by ▴ 70
6
votes
3
replies
838
views
trimmomatic and STAR alignments
trimmomatic STAR RNAseq sequencing reads
updated 12 months ago by ▴ 140 • written 12 months ago by ▴ 70
0
votes
1
reply
511
views
Difference between sratools and sratoolkit
sratoolkit sratools sra sequencing fastq
updated 10 months ago by 43k • written 13 months ago by ▴ 70
0
votes
0
replies
676
views
valid UMIs in STARsolo output?
starsolo single-cell UMIs RNA-seq
23 months ago by hamarillo ▴ 70
1
vote
1
reply
936
views
Seurat dotplot
seurat features dotplot variable markers
updated 2.0 years ago by ▴ 390 • written 2.0 years ago by ▴ 70
4
votes
2
replies
594
views
Should one use cell cycle regression on single-cell data from PBMCs?
cycle regression cell single PBMCs Seurat
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 70
4
votes
1
reply
627
views
snakemake rule ambiguity
ambiguity snakemake
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 70
1
vote
1
reply
2.5k
views
Seurat object data vs counts
seurat
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 70
1
vote
1
reply
604
views
What happens to the outputs when you update the rule's conda environment
conda snakemake environment
updated 2.3 years ago by ★ 2.1k • written 2.3 years ago by ▴ 70
0
votes
1
reply
799
views
Identification of cell types/groups in single-cell data
cell single type clustering
updated 2.6 years ago by ▴ 90 • written 2.6 years ago by ▴ 70
4
votes
2
replies
871
views
how do bioinformatic pipelines take into account different sequencing technologies?
pipelines snakemake design technology sequencing
updated 2.7 years ago by 141k • written 2.7 years ago by ▴ 70
0
votes
2
replies
2.2k
views
worm base genes biomaRt filter
wormbase biomart
updated 7.7 years ago by ★ 4.9k • written 7.7 years ago by ▴ 70
4
votes
3
replies
2.5k
views
different positions for a gene
biomaRt entrez start_position ensembl
updated 7.7 years ago by 47k • written 7.7 years ago by ▴ 70
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