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Picard HsMetrics on Whole Genome (no bedfile) need "HS_Penalty_20X & HS_LIBRARY_SIZE"
picard gatk
updated 5.5 years ago by 20 • written 8.1 years ago by ▴ 20
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5
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2.2k
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Graphing GC Bias in Sequence Capture
sequencing gcbias bed picard
updated 5.9 years ago by ▴ 110 • written 6.5 years ago by ▴ 20
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3
replies
1.7k
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Detecting GC Bias in Transcriptomes (RNA-seq)
RNA-Seq transcriptome
6.2 years ago by Jon17 ▴ 20
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1
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2.5k
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Comment: C: rnaseqc.v2.3 - Doesn't detect exons in GTF
6.2 years ago by Jon17 ▴ 20
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1
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2.5k
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Comment: C: rnaseqc.v2.3 - Doesn't detect exons in GTF
6.2 years ago by Jon17 ▴ 20
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4
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2.5k
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rnaseqc.v2.3 - Doesn't detect exons in GTF
RNA-Seq rna-seq qc mit gencode
updated 6.2 years ago by 45k • written 6.2 years ago by ▴ 20
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2.2k
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Comment: C: Graphing GC Bias in Sequence Capture
6.4 years ago by Jon17 ▴ 20
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1
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2.2k
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Comment: C: Graphing GC Bias in Sequence Capture
6.4 years ago by Jon17 ▴ 20
1
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0
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14k
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Comment: C: Compute mean depth coverage for exome data with paired end, overlapping, feature
6.6 years ago by Jon17 ▴ 20
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0
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1.5k
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Depth of coverage of Bed file regions?
bedtools bed genome coverage
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 20
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1
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3.9k
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Comment: C: De-multiplexing Single Index BCL & Fastq reads?
8.1 years ago by Jon17 ▴ 20
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1
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3.9k
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Comment: C: De-multiplexing Single Index BCL & Fastq reads?
8.1 years ago by Jon17 ▴ 20
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6
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3.9k
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De-multiplexing Single Index BCL & Fastq reads?
bcl2fastq illumina demultiplex single-index
updated 8.1 years ago by 35k • written 8.1 years ago by ▴ 20
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1
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4.5k
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Comment: A: Demultiplex fastq miseq reads
8.1 years ago by Jon17 ▴ 20
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2
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2.0k
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Have variant call file, need to do snp counts (methylation counts)
methyl-seq bisulfite-seq
updated 9.0 years ago by 20 • written 9.0 years ago by ▴ 20
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1
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2.5k
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Comment: C: Best Tools for analyzing Bisulfite sequencing bam files?
9.0 years ago by Jon17 ▴ 20
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1
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2.5k
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Comment: C: Best Tools for analyzing Bisulfite sequencing bam files?
9.0 years ago by Jon17 ▴ 20
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2.0k
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Comment: C: Have variant call file, need to do snp counts (methylation counts)
9.0 years ago by Jon17 ▴ 20
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4
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2.5k
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Best Tools for analyzing Bisulfite sequencing bam files?
BS-Seq
updated 9.0 years ago by 48k • written 9.0 years ago by ▴ 20
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1
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2.6k
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Comment: C: Full Size Bismark Test Dataset? Industry standard methods for Sequence capture
9.1 years ago by Jon17 ▴ 20
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3
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2.6k
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Full Size Bismark Test Dataset? Industry standard methods for Sequence capture
Bismark
9.1 years ago by Jon17 ▴ 20
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