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1
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1
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1.9k
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KEGG pathway file for running genome music path-scan
MuSic KEGG
7.2 years ago by Chirag Nepal ★ 2.4k
0
votes
2
replies
2.6k
views
Determine whether it is MSI (micro satellite instability) or not
MSI msisensors
updated 7.3 years ago by ▴ 60 • written 7.3 years ago by ★ 2.4k
0
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1
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4.1k
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Comment: C: How to merge chr+strand+coordinate+score from multiple files?
7.3 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.3k
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Comment: C: Identifying ago2 enriched genes under 2 different conditions
7.4 years ago by Chirag Nepal ★ 2.4k
0
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0
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19k
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Comment: C: Installation of the MuSiC suite on unsupported Linux distributions
7.4 years ago by Chirag Nepal ★ 2.4k
0
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1
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1.9k
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Comment: C: Tophat2 error: failed to retrieve right/left read for pair
7.4 years ago by Chirag Nepal ★ 2.4k
1
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1
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1.9k
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Count intron retention reads from BAM files
samtools intron-retention
updated 7.5 years ago by ★ 3.0k • written 7.5 years ago by ★ 2.4k
2
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1
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2.5k
views
Comment: A: Tophat not installing with Biostar Handbook
7.5 years ago by Chirag Nepal ★ 2.4k
0
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1
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2.7k
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Comment: C: How to determine high-quality somatic mutations
7.5 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.9k
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Comment: C: Finding zebrafish promoters ENSEMBL
7.5 years ago by Chirag Nepal ★ 2.4k
0
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0
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9.6k
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Comment: C: Small RNA sequence, how to calculate read counts? What's the criterion? Is there
7.6 years ago by Chirag Nepal ★ 2.4k
0
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2
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7.5k
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Comment: C: Best/right way to quantify small RNA transcripts
7.6 years ago by Chirag Nepal ★ 2.4k
7
votes
4
replies
7.5k
views
Best/right way to quantify small RNA transcripts
small RNA-seq RPM multi-mapping
updated 2.3 years ago by • 0 • written 7.6 years ago by ★ 2.4k
0
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1
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9.6k
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Comment: C: Small RNA sequence, how to calculate read counts? What's the criterion? Is there
7.6 years ago by Chirag Nepal ★ 2.4k
8
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1
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4.1k
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Answer: A: enhancer RNA counting from RNASeq data
7.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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5.9k
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Comment: C: about somatic mutation calling
7.6 years ago by Chirag Nepal ★ 2.4k
0
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1
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5.9k
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Comment: C: about somatic mutation calling
7.6 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
5.9k
views
Comment: C: about somatic mutation calling
7.6 years ago by Chirag Nepal ★ 2.4k
0
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2
replies
5.9k
views
Comment: C: about somatic mutation calling
7.6 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
5.9k
views
Comment: C: about somatic mutation calling
7.6 years ago by Chirag Nepal ★ 2.4k
0
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1
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5.9k
views
Comment: C: about somatic mutation calling
7.6 years ago by Chirag Nepal ★ 2.4k
1
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1
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1.7k
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Comment: C: Excised exon or transcribed snoRNA?
7.8 years ago by Chirag Nepal ★ 2.4k
44
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16
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26k
views
15 follow
Tutorial: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in population.
GISTIC varscan2 CNV copy-number
updated 3.1 years ago by 45k • written 10.0 years ago by ★ 2.4k
7
votes
6
replies
12k
views
How To Extract Spliced Rnaseq Reads
RNA-seq
updated 2.7 years ago by 45k • written 11.7 years ago by ★ 2.4k
0
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0
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4.8k
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Comment: C: Uniquely mapped in Human
8.0 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.0k
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Comment: C: Virus sequence detected in my RNA-seq reads
8.1 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
1.6k
views
Transcriptional strand bias on SNV from exome data
SNV exome Strand-bias
updated 8.1 years ago by 20 • written 8.1 years ago by ★ 2.4k
1
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0
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2.7k
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Comment: C: miRNA identification from RNA seq data
8.1 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.7k
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Comment: C: What is the recommended sequencing depth for ChIRP-seq?
8.1 years ago by Chirag Nepal ★ 2.4k
0
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1
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7.7k
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Comment: C: Plotting copy number varation: amplification and deletion data from GISTIC
8.4 years ago by Chirag Nepal ★ 2.4k
0
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0
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12k
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Comment: C: How to get promoter coordinates of hg19 from UCSC genome browser ?
8.4 years ago by Chirag Nepal ★ 2.4k
3
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1
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12k
views
Answer: A: How to get promoter coordinates of hg19 from UCSC genome browser ?
8.4 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.8k
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Comment: C: Mismatch on first base gives wrong TSS
8.4 years ago by Chirag Nepal ★ 2.4k
4
votes
7
replies
2.8k
views
Mismatch on first base gives wrong TSS
first-base mismatch clip-mismatch CIGAR CAGE
updated 8.4 years ago by ★ 2.9k • written 8.6 years ago by ★ 2.4k
0
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1
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4.5k
views
Comment: C: trimming reads in fastq file
8.4 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
4.5k
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Comment: C: Displaying somatic mutational signatures
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
2.8k
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Comment: C: Mismatch on first base gives wrong TSS
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.4k
views
Comment: C: smallRNA - adaptor trimming stringency
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.8k
views
Comment: C: Mismatch on first base gives wrong TSS
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.8k
views
Comment: C: Variants called differ dramatically between runs
8.7 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
4.6k
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Comment: C: Somatic Mutation Identification without Paired Normal Sample
8.7 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
4.6k
views
Comment: C: Ribosomal RNA in RNA-seq data
8.8 years ago by Chirag Nepal ★ 2.4k
1
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0
replies
1.8k
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Answer: A: Detecting non-exonic conserved regions
8.8 years ago by Chirag Nepal ★ 2.4k
3
votes
0
replies
1.8k
views
Answer: A: Publishing and research fees
8.8 years ago by Chirag Nepal ★ 2.4k
4
votes
3
replies
2.7k
views
Exome-seq; Which tools to predict significantly muated genes .
music varscan CNV
updated 8.8 years ago by 20 • written 8.9 years ago by ★ 2.4k
0
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0
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7.8k
views
Comment: C: Intersectbed/Coveragebed -Split Purify Exon?
8.9 years ago by Chirag Nepal ★ 2.4k
1
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0
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2.5k
views
Answer: A: identification of miRNA for zebrafish genes
8.9 years ago by Chirag Nepal ★ 2.4k
1
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3
replies
2.5k
views
Transcriptional regulator genes list
Genelist Transcriptional-regulator
updated 8.9 years ago by ▴ 10 • written 9.5 years ago by ★ 2.4k
0
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0
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6.3k
views
Comment: Comment: Identify somatic mutations in cancer exome without a matched pair.
updated 3.4 years ago by 45k • written 8.9 years ago by ★ 2.4k
0
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0
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2.5k
views
Comment: C: Finding Ultraconserved elements between human and zebrafish
9.0 years ago by Chirag Nepal ★ 2.4k
308 results • Page 2 of 7
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