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questions
6
votes
7
replies
2.3k
views
Ensembl ID converter not working?
ensembl
ID conversion
6.6 years ago by
ericbrenner
• 0
4
votes
4
replies
2.6k
views
Can you use Python to get download flanking sequences of genes from Ensembl's older releases/assemblies?
python
ensembl
genome
sequence
updated 6.6 years ago by
jared.andrews07
★ 16k • written 6.6 years ago by
ericbrenner
• 0
3
votes
6
replies
3.3k
views
Is there a way to fetch genomic sequences at given coordinates without downloading fasta files?
Python
R
sequence
genome
DNA
updated 6.6 years ago by
Matt Shirley
10k • written 6.6 years ago by
ericbrenner
• 0
8
votes
3
replies
1.5k
views
How do you use Biomart to get info about genes that didn't originate from Ensembl?
ensembl
genome
biomart
updated 6.6 years ago by
Jean-Karim Heriche
27k • written 6.6 years ago by
ericbrenner
• 0
6
votes
3
replies
1.6k
views
I have DNA motifs 6-12 bp long. Trying to get conservation measurements for them.
motif
conservation
updated 6.9 years ago by
shenwei356
8.5k • written 6.9 years ago by
ericbrenner
• 0
2
votes
2
replies
1.2k
views
Database for transcript and protein quantities?
proteome
transcriptome
database
updated 7.1 years ago by
Lars Juhl Jensen
11k • written 7.1 years ago by
ericbrenner
• 0
1
vote
3
replies
1.4k
views
Is there anything with a poly-A tail that isn't included in Ensembl's cDNA reference?
ensembl
cdna
7.2 years ago by
ericbrenner
• 0
0
votes
0
replies
1.0k
views
Can anyone recommend a good database for info about gene expression and Hi-C correlations?
hi-c
RNA-Seq
updated 7.2 years ago by
Biostar
20 • written 7.2 years ago by
ericbrenner
• 0
0
votes
0
replies
1.4k
views
Trying to align Stride sequences and find consensus sequence
Stride
alignment
consensus
7.3 years ago by
ericbrenner
• 0
0
votes
0
replies
1.1k
views
How can I make Rosetta run faster?
rosetta
7.4 years ago by
ericbrenner
• 0
0
votes
0
replies
1.3k
views
Clustering small peptides based on secondary structure sequence (DSSP classification with "C","H", and "E")
clustering
peptide
secondary structure
dssp
7.4 years ago by
ericbrenner
• 0
0
votes
0
replies
1.5k
views
Best Program(s) for Predicting Protein-Membrane Interactions?
membrane
protein
prediction
7.4 years ago by
ericbrenner
• 0
0
votes
0
replies
1.7k
views
"ERROR IN WEIGHTS" when running PSI-BLAST via PSIPRED
PSIPRED
BLAST
weights
7.4 years ago by
ericbrenner
• 0
0
votes
0
replies
1.5k
views
How well would NAMD work for de novo structure prediction of small peptides?
structure prediction
NAMD
de novo
small peptides
7.4 years ago by
ericbrenner
• 0
14 results • Page
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