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0
votes
1
reply
1.5k
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Comment:
C: Mimic WES on WGS data + A comprehensive list of coding regions in the most biolo
4.8 years ago by
lamteva.vera
▴ 220
0
votes
2
replies
1.5k
views
Comment:
C: Mimic WES on WGS data + A comprehensive list of coding regions in the most biolo
4.8 years ago by
lamteva.vera
▴ 220
2
votes
12
replies
1.5k
views
Mimic WES on WGS data + A comprehensive list of coding regions in the most biologically relevant transcripts
BED
canonical transcript
VCF
BAM
4.8 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
1.5k
views
Comment:
C: Mimick WES on WGS data + A comprehensive list of coding regions in the most biol
4.8 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
1.5k
views
Comment:
C: Mimick WES on WGS data + A comprehensive list of coding regions in the most biol
4.8 years ago by
lamteva.vera
▴ 220
1
vote
1
reply
10k
views
Comment:
C: BQSR: when it is applicable?
5.1 years ago by
lamteva.vera
▴ 220
24
votes
16
replies
10k
views
6 follow
BQSR: when it is applicable?
GATK
BQSR
base quality
updated 5.2 years ago by
demolidd77
▴ 60 • written 6.9 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
5.6k
views
Comment:
C: Is the impact of a frameshift mutation restricted to the exon in which it occurs
6.9 years ago by
lamteva.vera
▴ 220
3
votes
5
replies
5.6k
views
Is the impact of a frameshift mutation restricted to the exon in which it occurs?
frameshift mutation
updated 6.9 years ago by
WouterDeCoster
47k • written 6.9 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
6.5k
views
Comment:
C: dbSNP not using hg19?
6.9 years ago by
lamteva.vera
▴ 220
0
votes
3
replies
1.4k
views
Should the carrier screening test be restricted to a list of clinically proven pathogenic variants?
carrier-screening
NGS
clinical-report
updated 16 months ago by
Ram
44k • written 6.9 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
1.4k
views
Comment:
C: Should the carrier screening test be restricted to a list of clinically proven p
6.9 years ago by
lamteva.vera
▴ 220
37
votes
16
replies
4.4k
views
9 follow
Forum:
Sanger sequencing is no longer the gold standard?
Sanger
NGS
updated 16 months ago by
Ram
44k • written 6.9 years ago by
lamteva.vera
▴ 220
1
vote
1
reply
4.4k
views
Answer:
A: Sanger sequencing is no longer the gold standard?
6.9 years ago by
lamteva.vera
▴ 220
1
vote
1
reply
4.4k
views
Comment:
C: Sanger sequencing is no longer the gold standard?
6.9 years ago by
lamteva.vera
▴ 220
2
votes
1
reply
10k
views
Comment:
C: BQSR: when it is applicable?
6.9 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
10k
views
Comment:
C: BQSR: when it is applicable?
6.9 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
10k
views
Comment:
C: BQSR: when it is applicable?
6.9 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
10k
views
Comment:
C: BQSR: when it is applicable?
6.9 years ago by
lamteva.vera
▴ 220
1
vote
0
replies
2.0k
views
Soft-clipping primers from BAM introduces errors. Solution?
ValidateSamFile
BamClipper
Katana
soft-clipping
6.9 years ago by
lamteva.vera
▴ 220
1
vote
1
reply
4.1k
views
Comment:
C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
6.9 years ago by
lamteva.vera
▴ 220
4
votes
9
replies
4.1k
views
Soft-clipping primer sequences in targeted sequencing: approaches and tools
bamclipper
soft-clipping
PcrClipReads
Katana
6.9 years ago by
lamteva.vera
▴ 220
1
vote
0
replies
4.1k
views
Comment:
C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
4.1k
views
Comment:
C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.0 years ago by
lamteva.vera
▴ 220
0
votes
2
replies
4.1k
views
Comment:
C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
3.1k
views
Comment:
C: From FASTQ to clean BAM using GATK tutorial #6484
7.0 years ago by
lamteva.vera
▴ 220
0
votes
3
replies
3.1k
views
From FASTQ to clean BAM using GATK tutorial #6484
gatk
MergeBamAlignment
uBAM
bamclipper
updated 16 months ago by
Ram
44k • written 7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
2.1k
views
Comment:
C: Different BAM files generated using different commands in bash - which one is ri
7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
2.1k
views
Comment:
C: Different BAM files generated using different commands in bash - which one is ri
7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
2.1k
views
Comment:
C: Different BAM files generated using different commands in bash - which one is ri
7.0 years ago by
lamteva.vera
▴ 220
6
votes
8
replies
2.1k
views
Different BAM files generated using different commands in bash - which one is right?
BAM
bash
7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
2.7k
views
Comment:
C: How long does it take to build a pipeline?
7.0 years ago by
lamteva.vera
▴ 220
3
votes
4
replies
2.7k
views
Forum:
How long does it take to build a pipeline?
next-gen
self-learning
updated 16 months ago by
Ram
44k • written 7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
3.6k
views
Comment:
C: Which command line programs are parallelizable?
7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
3.5k
views
Comment:
C: Sequence length distribution after adapter trimming
7.0 years ago by
lamteva.vera
▴ 220
1
vote
3
replies
3.5k
views
Sequence length distribution after adapter trimming
adapter trimming
FastQC
bbduk
7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
5.9k
views
Comment:
C: Amplicon sequencing: how to handle adapters and primers?
7.0 years ago by
lamteva.vera
▴ 220
9
votes
7
replies
5.9k
views
Amplicon sequencing: how to handle adapters and primers?
amplicon
adapter trimming
updated 7.0 years ago by
Robert Sicko
▴ 630 • written 7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
5.9k
views
Comment:
C: Amplicon sequencing: how to handle adapters and primers?
7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
6.5k
views
Comment:
C: Mask or trim primer sequences in Amplicon sequencing
7.0 years ago by
lamteva.vera
▴ 220
1
vote
1
reply
3.2k
views
Comment:
C: How to handle off-target regions in amplicon panel analysis?
7.0 years ago by
lamteva.vera
▴ 220
4
votes
3
replies
3.2k
views
How to handle off-target regions in amplicon panel analysis?
off-target
targeted resequencing
updated 7.0 years ago by
Kevin Blighe
88k • written 7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
2.3k
views
Comment:
C: what should be taken care of during the bioinformatic analysis for targeted rese
7.0 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
4.7k
views
Comment:
C: Amplicon Sequencing Data Analysis
7.0 years ago by
lamteva.vera
▴ 220
0
votes
0
replies
6.0k
views
Answer:
A: What does Picard tools cleansam and fixemate exactly do and what are the equival
7.1 years ago by
lamteva.vera
▴ 220
0
votes
1
reply
3.9k
views
Comment:
C: Should I remove Kmers identified in FastQC?
7.8 years ago by
lamteva.vera
▴ 220
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