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Comment: C: Mimic WES on WGS data + A comprehensive list of coding regions in the most biolo
4.7 years ago by lamteva.vera ▴ 220
0
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2
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Comment: C: Mimic WES on WGS data + A comprehensive list of coding regions in the most biolo
4.7 years ago by lamteva.vera ▴ 220
2
votes
12
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1.4k
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Mimic WES on WGS data + A comprehensive list of coding regions in the most biologically relevant transcripts
BED canonical transcript VCF BAM
4.7 years ago by lamteva.vera ▴ 220
0
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1
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1.4k
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Comment: C: Mimick WES on WGS data + A comprehensive list of coding regions in the most biol
4.7 years ago by lamteva.vera ▴ 220
0
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1
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1.4k
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Comment: C: Mimick WES on WGS data + A comprehensive list of coding regions in the most biol
4.7 years ago by lamteva.vera ▴ 220
1
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1
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10k
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Comment: C: BQSR: when it is applicable?
5.0 years ago by lamteva.vera ▴ 220
24
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16
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10k
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6 follow
BQSR: when it is applicable?
GATK BQSR base quality
updated 5.1 years ago by ▴ 60 • written 6.8 years ago by ▴ 220
0
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0
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5.5k
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Comment: C: Is the impact of a frameshift mutation restricted to the exon in which it occurs
6.8 years ago by lamteva.vera ▴ 220
3
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5
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5.5k
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Is the impact of a frameshift mutation restricted to the exon in which it occurs?
frameshift mutation
updated 6.8 years ago by 47k • written 6.8 years ago by ▴ 220
0
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0
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6.5k
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Comment: C: dbSNP not using hg19?
6.8 years ago by lamteva.vera ▴ 220
0
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3
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1.4k
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Should the carrier screening test be restricted to a list of clinically proven pathogenic variants?
carrier-screening NGS clinical-report
updated 15 months ago by 44k • written 6.8 years ago by ▴ 220
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1
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1.4k
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Comment: C: Should the carrier screening test be restricted to a list of clinically proven p
6.8 years ago by lamteva.vera ▴ 220
37
votes
16
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4.4k
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9 follow
Forum: Sanger sequencing is no longer the gold standard?
Sanger NGS
updated 15 months ago by 44k • written 6.8 years ago by ▴ 220
1
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1
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4.4k
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Answer: A: Sanger sequencing is no longer the gold standard?
6.8 years ago by lamteva.vera ▴ 220
1
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1
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4.4k
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Comment: C: Sanger sequencing is no longer the gold standard?
6.8 years ago by lamteva.vera ▴ 220
2
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1
reply
10k
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Comment: C: BQSR: when it is applicable?
6.8 years ago by lamteva.vera ▴ 220
0
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0
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10k
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Comment: C: BQSR: when it is applicable?
6.8 years ago by lamteva.vera ▴ 220
0
votes
0
replies
10k
views
Comment: C: BQSR: when it is applicable?
6.8 years ago by lamteva.vera ▴ 220
0
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0
replies
10k
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Comment: C: BQSR: when it is applicable?
6.8 years ago by lamteva.vera ▴ 220
1
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0
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2.0k
views
Soft-clipping primers from BAM introduces errors. Solution?
ValidateSamFile BamClipper Katana soft-clipping
6.9 years ago by lamteva.vera ▴ 220
1
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1
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4.0k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
6.9 years ago by lamteva.vera ▴ 220
4
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9
replies
4.0k
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Soft-clipping primer sequences in targeted sequencing: approaches and tools
bamclipper soft-clipping PcrClipReads Katana
6.9 years ago by lamteva.vera ▴ 220
1
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0
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4.0k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
6.9 years ago by lamteva.vera ▴ 220
0
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0
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4.0k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
6.9 years ago by lamteva.vera ▴ 220
0
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2
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4.0k
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Comment: C: Soft-clipping primer sequences in targeted sequencing: approaches and tools
6.9 years ago by lamteva.vera ▴ 220
0
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1
reply
3.1k
views
Comment: C: From FASTQ to clean BAM using GATK tutorial #6484
6.9 years ago by lamteva.vera ▴ 220
0
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3
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3.1k
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From FASTQ to clean BAM using GATK tutorial #6484
gatk MergeBamAlignment uBAM bamclipper
updated 15 months ago by 44k • written 6.9 years ago by ▴ 220
0
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0
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2.0k
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Comment: C: Different BAM files generated using different commands in bash - which one is ri
6.9 years ago by lamteva.vera ▴ 220
0
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1
reply
2.0k
views
Comment: C: Different BAM files generated using different commands in bash - which one is ri
6.9 years ago by lamteva.vera ▴ 220
0
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1
reply
2.0k
views
Comment: C: Different BAM files generated using different commands in bash - which one is ri
6.9 years ago by lamteva.vera ▴ 220
6
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8
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2.0k
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Different BAM files generated using different commands in bash - which one is right?
BAM bash
6.9 years ago by lamteva.vera ▴ 220
0
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1
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2.7k
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Comment: C: How long does it take to build a pipeline?
6.9 years ago by lamteva.vera ▴ 220
3
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4
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2.7k
views
Forum: How long does it take to build a pipeline?
next-gen self-learning
updated 15 months ago by 44k • written 6.9 years ago by ▴ 220
0
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1
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3.6k
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Comment: C: Which command line programs are parallelizable?
6.9 years ago by lamteva.vera ▴ 220
0
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0
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3.5k
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Comment: C: Sequence length distribution after adapter trimming
6.9 years ago by lamteva.vera ▴ 220
1
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3
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3.5k
views
Sequence length distribution after adapter trimming
adapter trimming FastQC bbduk
6.9 years ago by lamteva.vera ▴ 220
0
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0
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5.8k
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Comment: C: Amplicon sequencing: how to handle adapters and primers?
6.9 years ago by lamteva.vera ▴ 220
9
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7
replies
5.8k
views
Amplicon sequencing: how to handle adapters and primers?
amplicon adapter trimming
updated 6.9 years ago by ▴ 630 • written 6.9 years ago by ▴ 220
0
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1
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5.8k
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Comment: C: Amplicon sequencing: how to handle adapters and primers?
6.9 years ago by lamteva.vera ▴ 220
0
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0
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6.4k
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Comment: C: Mask or trim primer sequences in Amplicon sequencing
6.9 years ago by lamteva.vera ▴ 220
1
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1
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3.2k
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Comment: C: How to handle off-target regions in amplicon panel analysis?
6.9 years ago by lamteva.vera ▴ 220
4
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3
replies
3.2k
views
How to handle off-target regions in amplicon panel analysis?
off-target targeted resequencing
updated 6.9 years ago by 88k • written 6.9 years ago by ▴ 220
0
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0
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2.3k
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Comment: C: what should be taken care of during the bioinformatic analysis for targeted rese
6.9 years ago by lamteva.vera ▴ 220
0
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1
reply
4.6k
views
Comment: C: Amplicon Sequencing Data Analysis
6.9 years ago by lamteva.vera ▴ 220
0
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0
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6.0k
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Answer: A: What does Picard tools cleansam and fixemate exactly do and what are the equival
7.0 years ago by lamteva.vera ▴ 220
0
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1
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3.8k
views
Comment: C: Should I remove Kmers identified in FastQC?
7.7 years ago by lamteva.vera ▴ 220
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