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Comment: Comment: How To Split A Bam File By Chromosome
6 months ago by Jorge Amigo 14k
5
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0
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470
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Answer: Answer: what is IGV visualization lighter color variants stand for
13 months ago by Jorge Amigo 14k
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0
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740
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Comment: Comment: Count values based on condition
23 months ago by Jorge Amigo 14k
1
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0
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740
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Answer: Answer: Count values based on condition
23 months ago by Jorge Amigo 14k
20
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11
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19k
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9 follow
How To Split A .Vcf.Gz File
vcf split vcftools
updated 4.6 years ago by 43k • written 13.2 years ago by 14k
3
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0
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1.2k
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Answer: Answer: How to distinguish INDELs from SNPs.
2.4 years ago by Jorge Amigo 14k
1
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0
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1.5k
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Answer: Answer: Detecting chromosone notation in vcf files
2.4 years ago by Jorge Amigo 14k
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0
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15k
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Comment: Comment: Split a VCF file into individual sample files
2.6 years ago by Jorge Amigo 14k
0
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1
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15k
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Comment: Comment: Split a VCF file into individual sample files
2.6 years ago by Jorge Amigo 14k
1
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0
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2.0k
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Answer: Answer: Compare two VCF files in Python
2.6 years ago by Jorge Amigo 14k
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1
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239k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
2.6 years ago by Jorge Amigo 14k
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2.0k
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Comment: Comment: Change chromosome notation in dbSNP VCF file
2.7 years ago by Jorge Amigo 14k
0
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1
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801
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Comment: Comment: Where can I find VCF files of the same source
2.7 years ago by Jorge Amigo 14k
2
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0
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1.3k
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Answer: Answer: How to adjust sequence line to 60bp?
2.7 years ago by Jorge Amigo 14k
0
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0
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803
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Answer: Answer: Platypus
2.7 years ago by Jorge Amigo 14k
3
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1
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1.1k
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Answer: Answer: Convert a VCF-file in a user specific Format
2.7 years ago by Jorge Amigo 14k
0
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2
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113k
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Comment: Comment: How To Split A Bam File By Chromosome
2.8 years ago by Jorge Amigo 14k
0
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1
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113k
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Comment: Comment: How To Split A Bam File By Chromosome
2.8 years ago by Jorge Amigo 14k
3
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1
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969
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Answer: Answer: Count number of occurrences an annotation in a multisample vcf split into multip
2.8 years ago by Jorge Amigo 14k
0
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1
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1.7k
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Comment: Comment: How to filter gnomADe_AF < 0.001 with unix?
2.8 years ago by Jorge Amigo 14k
0
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0
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1.2k
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Comment: Comment: annotate sites with gene info
2.8 years ago by Jorge Amigo 14k
2
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1
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1.5k
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Answer: Answer: Sum up value within a interval
2.8 years ago by Jorge Amigo 14k
2
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0
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35k
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Comment: Comment: [main_samview] fail to read the header from sample.bam
2.8 years ago by Jorge Amigo 14k
0
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1
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1.2k
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Answer: Answer: annotate sites with gene info
2.8 years ago by Jorge Amigo 14k
3
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0
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4.8k
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Answer: Answer: How to generate start & end coordinates for each chromosome of human ref genome
2.8 years ago by Jorge Amigo 14k
1
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0
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2.7k
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Answer: Answer: Extract chromosome 1 - 22 ,X and Y from BAM file
2.9 years ago by Jorge Amigo 14k
2
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1
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1.0k
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Answer: Answer: How do I write the regex expression for the line?
2.9 years ago by Jorge Amigo 14k
0
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0
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1.9k
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Comment: Comment: alignement and Variant calling with BWA and samtools
2.9 years ago by Jorge Amigo 14k
0
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1
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2.8k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
2.9 years ago by Jorge Amigo 14k
1
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1
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2.8k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
3.0 years ago by Jorge Amigo 14k
1
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1
reply
2.6k
views
Answer: Answer: Installing Bedtools with Cygwin fails.
3.0 years ago by Jorge Amigo 14k
0
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1
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1.1k
views
Comment: Comment: How to capture the position of SNPs from the gene's locations
3.0 years ago by Jorge Amigo 14k
0
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0
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983
views
Answer: Answer: Find all genes in multiple regions
3.0 years ago by Jorge Amigo 14k
2
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1
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1.1k
views
Answer: Answer: How to capture the position of SNPs from the gene's locations
3.0 years ago by Jorge Amigo 14k
2
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1
reply
2.8k
views
Answer: Answer: Bamtools stats and samtools flagstat produce different results and confusing my
3.0 years ago by Jorge Amigo 14k
0
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0
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1.3k
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Comment: Comment: Comparing fastq files
3.0 years ago by Jorge Amigo 14k
0
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0
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2.6k
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Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Jorge Amigo 14k
0
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1
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2.6k
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Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Jorge Amigo 14k
1
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1
reply
2.2k
views
Answer: Answer: How do I interpret a 200bp reduction of coverage in a gene exon?
3.0 years ago by Jorge Amigo 14k
5
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1
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2.6k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Jorge Amigo 14k
1
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0
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2.6k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Jorge Amigo 14k
0
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0
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5.2k
views
Comment: Comment: How to convert maf to vcf while retaining original mutation notations?
3.0 years ago by Jorge Amigo 14k
1
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1
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5.2k
views
Answer: Answer: How to convert maf to vcf while retaining original mutation notations?
3.0 years ago by Jorge Amigo 14k
1
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1
reply
1.9k
views
Answer: Answer: alignement and Variant calling with BWA and samtools
3.0 years ago by Jorge Amigo 14k
2
votes
1
reply
2.6k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
3.0 years ago by Jorge Amigo 14k
1
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0
replies
900
views
Answer: Answer: SNP count in a set of genomic regions
3.0 years ago by Jorge Amigo 14k
1
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0
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799
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Answer: Answer: two allele frequency
3.0 years ago by Jorge Amigo 14k
2
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0
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2.6k
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Answer: Answer: 1000G Tabix download: EOF marker is absent
3.0 years ago by Jorge Amigo 14k
0
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0
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3.1k
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Answer: Answer: How to get SNPs genotype matrix from vcf file for JoinMap analysis?
3.0 years ago by Jorge Amigo 14k
0
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0
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1.8k
views
Answer: Answer: ExomeDepth negative BF (bayesian factor) values meaning
3.0 years ago by Jorge Amigo 14k
882 results • Page 1 of 18
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