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5
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219
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Answer: Answer: what is IGV visualization lighter color variants stand for
9 weeks ago by Jorge Amigo 14k
1
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0
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482
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Comment: Comment: Count values based on condition
12 months ago by Jorge Amigo 14k
1
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0
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482
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Answer: Answer: Count values based on condition
12 months ago by Jorge Amigo 14k
20
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11
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17k
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9 follow
How To Split A .Vcf.Gz File
vcf split vcftools
updated 12 months ago by • 0 • written 12.3 years ago by 14k
3
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0
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835
views
Answer: Answer: How to distinguish INDELs from SNPs.
18 months ago by Jorge Amigo 14k
1
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0
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867
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Answer: Answer: Detecting chromosone notation in vcf files
18 months ago by Jorge Amigo 14k
0
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0
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12k
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Comment: Comment: Split a VCF file into individual sample files
20 months ago by Jorge Amigo 14k
0
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1
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12k
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Comment: Comment: Split a VCF file into individual sample files
20 months ago by Jorge Amigo 14k
1
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0
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1.5k
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Answer: Answer: Compare two VCF files in Python
20 months ago by Jorge Amigo 14k
0
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1
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218k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
20 months ago by Jorge Amigo 14k
0
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0
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1.5k
views
Comment: Comment: Change chromosome notation in dbSNP VCF file
21 months ago by Jorge Amigo 14k
0
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1
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597
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Comment: Comment: Where can I find VCF files of the same source
21 months ago by Jorge Amigo 14k
2
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0
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957
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Answer: Answer: How to adjust sequence line to 60bp?
21 months ago by Jorge Amigo 14k
0
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0
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552
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Answer: Answer: Platypus
21 months ago by Jorge Amigo 14k
3
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1
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781
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Answer: Answer: Convert a VCF-file in a user specific Format
21 months ago by Jorge Amigo 14k
0
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2
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99k
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Comment: Comment: How To Split A Bam File By Chromosome
22 months ago by Jorge Amigo 14k
0
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1
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99k
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Comment: Comment: How To Split A Bam File By Chromosome
22 months ago by Jorge Amigo 14k
3
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1
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658
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Answer: Answer: Count number of occurrences an annotation in a multisample vcf split into multip
22 months ago by Jorge Amigo 14k
0
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1
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1.0k
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Comment: Comment: How to filter gnomADe_AF < 0.001 with unix?
22 months ago by Jorge Amigo 14k
0
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0
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855
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Comment: Comment: annotate sites with gene info
22 months ago by Jorge Amigo 14k
2
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1
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1.0k
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Answer: Answer: Sum up value within a interval
22 months ago by Jorge Amigo 14k
2
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0
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27k
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Comment: Comment: [main_samview] fail to read the header from sample.bam
22 months ago by Jorge Amigo 14k
0
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1
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855
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Answer: Answer: annotate sites with gene info
22 months ago by Jorge Amigo 14k
2
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0
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3.2k
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Answer: Answer: How to generate start & end coordinates for each chromosome of human ref genome
22 months ago by Jorge Amigo 14k
1
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0
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1.5k
views
Answer: Answer: Extract chromosome 1 - 22 ,X and Y from BAM file
24 months ago by Jorge Amigo 14k
2
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1
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758
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Answer: Answer: How do I write the regex expression for the line?
24 months ago by Jorge Amigo 14k
0
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0
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1.2k
views
Comment: Comment: alignement and Variant calling with BWA and samtools
2.0 years ago by Jorge Amigo 14k
0
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1
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1.8k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
2.0 years ago by Jorge Amigo 14k
1
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1
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1.8k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
2.0 years ago by Jorge Amigo 14k
1
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1
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2.2k
views
Answer: Answer: Installing Bedtools with Cygwin fails.
2.0 years ago by Jorge Amigo 14k
0
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1
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843
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Comment: Comment: How to capture the position of SNPs from the gene's locations
2.0 years ago by Jorge Amigo 14k
0
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0
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772
views
Answer: Answer: Find all genes in multiple regions
2.1 years ago by Jorge Amigo 14k
2
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1
reply
843
views
Answer: Answer: How to capture the position of SNPs from the gene's locations
2.0 years ago by Jorge Amigo 14k
2
votes
1
reply
1.8k
views
Answer: Answer: Bamtools stats and samtools flagstat produce different results and confusing my
2.1 years ago by Jorge Amigo 14k
0
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0
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984
views
Comment: Comment: Comparing fastq files
2.1 years ago by Jorge Amigo 14k
0
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0
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1.8k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
2.1 years ago by Jorge Amigo 14k
0
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1
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1.8k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
2.1 years ago by Jorge Amigo 14k
1
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1
reply
1.6k
views
Answer: Answer: How do I interpret a 200bp reduction of coverage in a gene exon?
2.1 years ago by Jorge Amigo 14k
4
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1
reply
1.8k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
2.1 years ago by Jorge Amigo 14k
1
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0
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1.8k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
2.1 years ago by Jorge Amigo 14k
0
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0
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3.5k
views
Comment: Comment: How to convert maf to vcf while retaining original mutation notations?
2.1 years ago by Jorge Amigo 14k
1
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1
reply
3.5k
views
Answer: Answer: How to convert maf to vcf while retaining original mutation notations?
2.1 years ago by Jorge Amigo 14k
1
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1
reply
1.2k
views
Answer: Answer: alignement and Variant calling with BWA and samtools
2.1 years ago by Jorge Amigo 14k
2
votes
1
reply
1.8k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
2.1 years ago by Jorge Amigo 14k
1
vote
0
replies
690
views
Answer: Answer: SNP count in a set of genomic regions
2.1 years ago by Jorge Amigo 14k
1
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0
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599
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Answer: Answer: two allele frequency
2.1 years ago by Jorge Amigo 14k
2
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0
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1.9k
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Answer: Answer: 1000G Tabix download: EOF marker is absent
2.1 years ago by Jorge Amigo 14k
0
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0
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2.4k
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Answer: Answer: How to get SNPs genotype matrix from vcf file for JoinMap analysis?
2.1 years ago by Jorge Amigo 14k
0
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0
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1.2k
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Answer: Answer: ExomeDepth negative BF (bayesian factor) values meaning
2.1 years ago by Jorge Amigo 14k
1
vote
0
replies
23k
views
Comment: Comment: Splitting vcf files to individual samples
2.1 years ago by Jorge Amigo 14k
881 results • Page 1 of 18
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