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5
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294
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Answer: Answer: what is IGV visualization lighter color variants stand for
6 months ago by Jorge Amigo 14k
1
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0
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578
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Comment: Comment: Count values based on condition
16 months ago by Jorge Amigo 14k
1
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0
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578
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Answer: Answer: Count values based on condition
16 months ago by Jorge Amigo 14k
20
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11
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18k
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9 follow
How To Split A .Vcf.Gz File
vcf split vcftools
updated 4.1 years ago by 40k • written 12.7 years ago by 14k
3
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0
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944
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Answer: Answer: How to distinguish INDELs from SNPs.
22 months ago by Jorge Amigo 14k
1
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0
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1.1k
views
Answer: Answer: Detecting chromosone notation in vcf files
22 months ago by Jorge Amigo 14k
0
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0
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13k
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Comment: Comment: Split a VCF file into individual sample files
24 months ago by Jorge Amigo 14k
0
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1
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13k
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Comment: Comment: Split a VCF file into individual sample files
24 months ago by Jorge Amigo 14k
1
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0
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1.7k
views
Answer: Answer: Compare two VCF files in Python
2.0 years ago by Jorge Amigo 14k
0
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1
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226k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
2.0 years ago by Jorge Amigo 14k
0
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0
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1.7k
views
Comment: Comment: Change chromosome notation in dbSNP VCF file
2.1 years ago by Jorge Amigo 14k
0
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1
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661
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Comment: Comment: Where can I find VCF files of the same source
2.1 years ago by Jorge Amigo 14k
2
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0
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1.1k
views
Answer: Answer: How to adjust sequence line to 60bp?
2.1 years ago by Jorge Amigo 14k
0
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0
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633
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Answer: Answer: Platypus
2.1 years ago by Jorge Amigo 14k
3
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1
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883
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Answer: Answer: Convert a VCF-file in a user specific Format
2.1 years ago by Jorge Amigo 14k
0
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2
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105k
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Comment: Comment: How To Split A Bam File By Chromosome
2.2 years ago by Jorge Amigo 14k
0
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1
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105k
views
Comment: Comment: How To Split A Bam File By Chromosome
2.2 years ago by Jorge Amigo 14k
3
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1
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775
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Answer: Answer: Count number of occurrences an annotation in a multisample vcf split into multip
2.2 years ago by Jorge Amigo 14k
0
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1
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1.3k
views
Comment: Comment: How to filter gnomADe_AF < 0.001 with unix?
2.2 years ago by Jorge Amigo 14k
0
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0
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964
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Comment: Comment: annotate sites with gene info
2.2 years ago by Jorge Amigo 14k
2
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1
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1.2k
views
Answer: Answer: Sum up value within a interval
2.2 years ago by Jorge Amigo 14k
2
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0
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30k
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Comment: Comment: [main_samview] fail to read the header from sample.bam
2.2 years ago by Jorge Amigo 14k
0
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1
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964
views
Answer: Answer: annotate sites with gene info
2.2 years ago by Jorge Amigo 14k
3
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0
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3.8k
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Answer: Answer: How to generate start & end coordinates for each chromosome of human ref genome
2.2 years ago by Jorge Amigo 14k
1
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0
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2.0k
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Answer: Answer: Extract chromosome 1 - 22 ,X and Y from BAM file
2.3 years ago by Jorge Amigo 14k
2
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1
reply
862
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Answer: Answer: How do I write the regex expression for the line?
2.3 years ago by Jorge Amigo 14k
0
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0
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1.5k
views
Comment: Comment: alignement and Variant calling with BWA and samtools
2.3 years ago by Jorge Amigo 14k
0
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1
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2.2k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
2.4 years ago by Jorge Amigo 14k
1
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1
reply
2.2k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
2.4 years ago by Jorge Amigo 14k
1
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1
reply
2.3k
views
Answer: Answer: Installing Bedtools with Cygwin fails.
2.4 years ago by Jorge Amigo 14k
0
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1
reply
926
views
Comment: Comment: How to capture the position of SNPs from the gene's locations
2.4 years ago by Jorge Amigo 14k
0
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0
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847
views
Answer: Answer: Find all genes in multiple regions
2.4 years ago by Jorge Amigo 14k
2
votes
1
reply
926
views
Answer: Answer: How to capture the position of SNPs from the gene's locations
2.4 years ago by Jorge Amigo 14k
2
votes
1
reply
2.2k
views
Answer: Answer: Bamtools stats and samtools flagstat produce different results and confusing my
2.4 years ago by Jorge Amigo 14k
0
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0
replies
1.1k
views
Comment: Comment: Comparing fastq files
2.4 years ago by Jorge Amigo 14k
0
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0
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2.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
0
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1
reply
2.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
1
vote
1
reply
1.8k
views
Answer: Answer: How do I interpret a 200bp reduction of coverage in a gene exon?
2.4 years ago by Jorge Amigo 14k
4
votes
1
reply
2.1k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
1
vote
0
replies
2.1k
views
Comment: Comment: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
0
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0
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4.2k
views
Comment: Comment: How to convert maf to vcf while retaining original mutation notations?
2.4 years ago by Jorge Amigo 14k
1
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1
reply
4.2k
views
Answer: Answer: How to convert maf to vcf while retaining original mutation notations?
2.4 years ago by Jorge Amigo 14k
1
vote
1
reply
1.5k
views
Answer: Answer: alignement and Variant calling with BWA and samtools
2.4 years ago by Jorge Amigo 14k
2
votes
1
reply
2.1k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
1
vote
0
replies
768
views
Answer: Answer: SNP count in a set of genomic regions
2.4 years ago by Jorge Amigo 14k
1
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0
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681
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Answer: Answer: two allele frequency
2.4 years ago by Jorge Amigo 14k
2
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0
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2.2k
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Answer: Answer: 1000G Tabix download: EOF marker is absent
2.4 years ago by Jorge Amigo 14k
0
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0
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2.6k
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Answer: Answer: How to get SNPs genotype matrix from vcf file for JoinMap analysis?
2.4 years ago by Jorge Amigo 14k
0
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0
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1.4k
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Answer: Answer: ExomeDepth negative BF (bayesian factor) values meaning
2.5 years ago by Jorge Amigo 14k
1
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0
replies
25k
views
Comment: Comment: Splitting vcf files to individual samples
2.5 years ago by Jorge Amigo 14k
881 results • Page 1 of 18
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