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Answer: Answer: Error in pheatmap 'Error in hclust(d, method = method) : must have n >= 2 object
13 months ago by yura.grabovska ▴ 870
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Answer: Answer: filter genes for differential gene expression
13 months ago by yura.grabovska ▴ 870
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452
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CODEX/Phenocycler -> QuPath -> Seurat pipeline basic help needed
QuPath CODEX Seurat Phenocycler
13 months ago by yura.grabovska ▴ 870
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1
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1.7k
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Understanding behaviour of SCTransform in Seurat
Seurat scRNASeq normalization
updated 13 months ago by • 0 • written 17 months ago by ▴ 870
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1.3k
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
13 months ago by yura.grabovska ▴ 870
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1.3k
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Comment: Comment: Best practice for gene ontology/pathway/geneset enrichment in 10x data
13 months ago by yura.grabovska ▴ 870
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6
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1.3k
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Best practice for gene ontology/pathway/geneset enrichment in 10x data
R Seurat scRNA
updated 13 months ago by ★ 19k • written 13 months ago by ▴ 870
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Comment: Comment: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
13 months ago by yura.grabovska ▴ 870
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1
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3.8k
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Comment: Comment: Can't reproduce harmony results in Seurat
13 months ago by yura.grabovska ▴ 870
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3.8k
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Comment: Comment: Can't reproduce harmony results in Seurat
13 months ago by yura.grabovska ▴ 870
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2.0k
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Answer: Answer: Help Analysing Perturb-Seq Data - How do I extract 10X cell barcodes and relevan
13 months ago by yura.grabovska ▴ 870
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1.1k
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Comment: Comment: Weird outcomes from employing NMF on scRNA-seq data
13 months ago by yura.grabovska ▴ 870
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3.8k
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Comment: Comment: Can't reproduce harmony results in Seurat
13 months ago by yura.grabovska ▴ 870
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1
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3.8k
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Answer: Answer: Can't reproduce harmony results in Seurat
13 months ago by yura.grabovska ▴ 870
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946
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Comment: Comment: Weird looking volcano plot
13 months ago by yura.grabovska ▴ 870
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1.1k
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Answer: Answer: Weird outcomes from employing NMF on scRNA-seq data
13 months ago by yura.grabovska ▴ 870
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0
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1.1k
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Answer: Answer: Statistics of methylation experiments
13 months ago by yura.grabovska ▴ 870
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0
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Answer: Answer: Using findmarker of seurat with different test.use but getting the same resulat.
14 months ago by yura.grabovska ▴ 870
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2.1k
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Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
14 months ago by yura.grabovska ▴ 870
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1.0k
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Comment: Comment: How to convert h5ad object to rds object without raw counts?
14 months ago by yura.grabovska ▴ 870
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1.0k
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Comment: Comment: How to convert h5ad object to rds object without raw counts?
15 months ago by yura.grabovska ▴ 870
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1.3k
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Comment: Comment: Selecting top signature score from signatures with different distributions
15 months ago by yura.grabovska ▴ 870
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1.1k
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Answer: Answer: Integration of scRNA-seq datasets from different tissues
15 months ago by yura.grabovska ▴ 870
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1.3k
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Comment: Comment: Selecting top signature score from signatures with different distributions
15 months ago by yura.grabovska ▴ 870
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1
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1.3k
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Comment: Comment: Selecting top signature score from signatures with different distributions
15 months ago by yura.grabovska ▴ 870
2
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6
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1.3k
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Selecting top signature score from signatures with different distributions
R classification distributions
updated 15 months ago by 5.1k • written 15 months ago by ▴ 870
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0
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2.8k
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Answer: Answer: How to Read .CEL files in R-studio?
15 months ago by yura.grabovska ▴ 870
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5
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1.1k
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Suggestions for resource for running R training
R environments training
updated 15 months ago by ★ 2.1k • written 15 months ago by ▴ 870
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1.1k
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Comment: Comment: Suggestions for resource for running R training
15 months ago by yura.grabovska ▴ 870
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1
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924
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Comment: Comment: Help with cnet plot for customize pathway from MSigDb
15 months ago by yura.grabovska ▴ 870
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1.0k
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Answer: Answer: Help with heatmaps
15 months ago by yura.grabovska ▴ 870
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1.5k
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Comment: Comment: Issue with converting Affy IDs to gene IDs/symbols
15 months ago by yura.grabovska ▴ 870
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0
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515
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Clustering single-cell CNV data
R clustering infercnv CNV scRNA
15 months ago by yura.grabovska ▴ 870
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1.5k
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Comment: Comment: Issue with converting Affy IDs to gene IDs/symbols
15 months ago by yura.grabovska ▴ 870
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1
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1.3k
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Comment: Comment: adjusting pheatmap based on common genes
15 months ago by yura.grabovska ▴ 870
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1.5k
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Answer: Answer: scRNA-seq: Do people eliminate housekeeping genes for the sake of increasing alg
15 months ago by yura.grabovska ▴ 870
2
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1
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1.5k
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Answer: Answer: Issue with converting Affy IDs to gene IDs/symbols
15 months ago by yura.grabovska ▴ 870
2
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2
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1.3k
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Answer: Answer: adjusting pheatmap based on common genes
15 months ago by yura.grabovska ▴ 870
2
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0
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1.4k
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Comment: Comment: Help with R programming assignment
15 months ago by yura.grabovska ▴ 870
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0
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1.8k
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Comment: Comment: Differential analysis of enrichment results
15 months ago by yura.grabovska ▴ 870
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1
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1.8k
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Answer: Answer: Differential analysis of enrichment results
15 months ago by yura.grabovska ▴ 870
2
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2.8k
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Answer: Answer: Change the layout of the Venn diagram
15 months ago by yura.grabovska ▴ 870
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1
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2.0k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
15 months ago by yura.grabovska ▴ 870
1
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1
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955
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Answer: Answer: Help with complex Volcano Plot
16 months ago by yura.grabovska ▴ 870
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459
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Interpreting cNMF with 2 equivalent best ranks
python cNMF
16 months ago by yura.grabovska ▴ 870
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0
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1.3k
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Comment: Comment: Findind the annotation file of the Illumina Infinium HumanMethylation450k array
16 months ago by yura.grabovska ▴ 870
2
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1
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1.3k
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Answer: Answer: Findind the annotation file of the Illumina Infinium HumanMethylation450k array
16 months ago by yura.grabovska ▴ 870
1
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2
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2.0k
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
16 months ago by yura.grabovska ▴ 870
0
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1
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2.0k
views
Answer: Answer: Before doing pseudobulk, should we get rid of genes that are only expressed in a
16 months ago by yura.grabovska ▴ 870
0
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0
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827
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Answer: Answer: Statistical test or method to test relationship between nearby genes and CpG sit
16 months ago by yura.grabovska ▴ 870
185 results • Page 3 of 4
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