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2
votes
4
replies
3.1k
views
Need help teasing out insertions and deletions with bcftools stats file.vcf > file.stats
bcftools indel vcf insertion deletion
updated 8 months ago by • 0 • written 5.7 years ago by ▴ 200
0
votes
1
reply
4.1k
views
Comment: C: R Update on Linux
5.3 years ago by oars ▴ 200
0
votes
2
replies
4.1k
views
Comment: C: R Update on Linux
5.3 years ago by oars ▴ 200
0
votes
1
reply
4.1k
views
Comment: C: R Update on Linux
5.3 years ago by oars ▴ 200
6
votes
13
replies
23k
views
R - Multiple boxplots
R Bioconductor
updated 5.3 years ago by ▴ 700 • written 5.3 years ago by ▴ 200
0
votes
1
reply
23k
views
Comment: C: R - Multiple boxplots
5.3 years ago by oars ▴ 200
0
votes
1
reply
23k
views
Comment: C: R - Multiple boxplots
5.3 years ago by oars ▴ 200
11
votes
11
replies
4.1k
views
R Update on Linux
R Bioconductor Linux
5.4 years ago by oars ▴ 200
0
votes
1
reply
1.3k
views
Comment: C: R Syntax Question, Bioconductor data
5.4 years ago by oars ▴ 200
0
votes
0
replies
1.3k
views
Comment: C: R Syntax Question, Bioconductor data
5.4 years ago by oars ▴ 200
0
votes
1
reply
1.3k
views
Comment: C: R Syntax Question, Bioconductor data
5.4 years ago by oars ▴ 200
0
votes
5
replies
1.3k
views
Comment: C: R Syntax Question, Bioconductor data
5.4 years ago by oars ▴ 200
5
votes
6
replies
2.7k
views
Locating Multiple Alternate Alleles in gatk.vcf file
GATK VCF
updated 5.4 years ago by 86k • written 5.7 years ago by ▴ 200
19
votes
14
replies
1.3k
views
R Syntax Question, Bioconductor data
R Bioconductor
updated 5.4 years ago by 8.9k • written 5.4 years ago by ▴ 200
5
votes
9
replies
10k
views
Error with samtools faidx...Different line length in sequence
samtools faidx
updated 5.5 years ago by 20 • written 5.7 years ago by ▴ 200
0
votes
0
replies
8.7k
views
Comment: C: Variant Calls: Freebayes vs GATK
5.7 years ago by oars ▴ 200
15
votes
7
replies
8.7k
views
Variant Calls: Freebayes vs GATK
vcf freebayes gatk
updated 8 months ago by 41k • written 5.7 years ago by ▴ 200
1
vote
3
replies
2.3k
views
Comment: C: Simple count of dbSNP (rs...) from .vcf file
5.7 years ago by oars ▴ 200
0
votes
1
reply
8.7k
views
Comment: C: Variant Calls: Freebayes vs GATK
5.7 years ago by oars ▴ 200
0
votes
1
reply
2.3k
views
Comment: C: Simple count of dbSNP (rs...) from .vcf file
5.7 years ago by oars ▴ 200
3
votes
1
reply
8.7k
views
Comment: C: Variant Calls: Freebayes vs GATK
5.7 years ago by oars ▴ 200
1
vote
1
reply
6.8k
views
Comment: C: Identifying Heterozygous Variants in VCF file using vcftools or bcftools
5.7 years ago by oars ▴ 200
0
votes
1
reply
2.3k
views
Comment: C: Simple count of dbSNP (rs...) from .vcf file
5.7 years ago by oars ▴ 200
0
votes
1
reply
2.3k
views
Comment: C: Simple count of dbSNP (rs...) from .vcf file
5.7 years ago by oars ▴ 200
0
votes
1
reply
2.3k
views
Comment: C: Simple count of dbSNP (rs...) from .vcf file
5.7 years ago by oars ▴ 200
8
votes
3
replies
6.8k
views
Identifying Heterozygous Variants in VCF file using vcftools or bcftools
Heterozygous vcftools bcftools
updated 5.7 years ago by 86k • written 5.7 years ago by ▴ 200
13
votes
13
replies
2.3k
views
Simple count of dbSNP (rs...) from .vcf file
vcf dbSNP
updated 8 months ago by 41k • written 5.7 years ago by ▴ 200
0
votes
0
replies
3.1k
views
Comment: C: Need help teasing out insertions and deletions with bcftools stats file.vcf > fi
5.7 years ago by oars ▴ 200
0
votes
1
reply
3.1k
views
Comment: C: Need help teasing out insertions and deletions with bcftools stats file.vcf > fi
5.7 years ago by oars ▴ 200
1
vote
0
replies
2.7k
views
Comment: C: Locating Multiple Alternate Alleles in gatk.vcf file
5.7 years ago by oars ▴ 200
0
votes
1
reply
2.7k
views
Comment: C: Locating Multiple Alternate Alleles in gatk.vcf file
5.7 years ago by oars ▴ 200
0
votes
0
replies
10k
views
Comment: C: Error with samtools faidx...Different line length in sequence
5.7 years ago by oars ▴ 200
0
votes
2
replies
10k
views
Comment: C: Error with samtools faidx...Different line length in sequence
5.7 years ago by oars ▴ 200
0
votes
1
reply
10k
views
Comment: C: Error with samtools faidx...Different line length in sequence
5.7 years ago by oars ▴ 200
0
votes
0
replies
10k
views
Comment: C: Error with samtools faidx...Different line length in sequence
5.7 years ago by oars ▴ 200
0
votes
2
replies
7.5k
views
Comment: C: GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
5.7 years ago by oars ▴ 200
8
votes
4
replies
7.5k
views
GATK: Unzipped files Cannot Find GenomeAnalysisTK.jar?
GATK
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 200
0
votes
0
replies
2.7k
views
Comment: C: Running Picard as an Executable Program
5.7 years ago by oars ▴ 200
3
votes
2
replies
2.7k
views
Running Picard as an Executable Program
Picard
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 200
0
votes
1
reply
5.0k
views
Comment: C: samtools - Finding Average Fragment size for pair?
5.7 years ago by oars ▴ 200
4
votes
5
replies
5.0k
views
samtools - Finding Average Fragment size for pair?
samtools
updated 5.7 years ago by ★ 3.8k • written 5.7 years ago by ▴ 200
0
votes
0
replies
4.7k
views
Comment: C: samtools view: failed to open "sort" for reading: No such file or directory
5.7 years ago by oars ▴ 200
6
votes
5
replies
4.7k
views
samtools view: failed to open "sort" for reading: No such file or directory
samtools
updated 5.7 years ago by 158k • written 5.7 years ago by ▴ 200
0
votes
0
replies
5.0k
views
Comment: C: fast-dump error, SRA Toolkit is Updated???
5.7 years ago by oars ▴ 200
0
votes
1
reply
5.0k
views
Comment: C: fast-dump error, SRA Toolkit is Updated???
5.8 years ago by oars ▴ 200
1
vote
8
replies
5.0k
views
fast-dump error, SRA Toolkit is Updated???
fastq-dump SRAtoolkit
updated 5 months ago by 41k • written 5.8 years ago by ▴ 200
2
votes
2
replies
1.5k
views
Sorting file by column, with missing values
glimmer sort awk
5.8 years ago by oars ▴ 200
1
vote
3
replies
1.5k
views
grep errors for FASTA file (possible glimmer error?)
grep glimmer
5.8 years ago by oars ▴ 200
0
votes
0
replies
1.5k
views
Answer: A: grep errors for FASTA file (possible glimmer error?)
5.8 years ago by oars ▴ 200
0
votes
0
replies
1.5k
views
Comment: C: grep errors for FASTA file
5.8 years ago by oars ▴ 200
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