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Comment: C: Parsing RepeatMasker Output Files
6.8 years ago by corend ▴ 70
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0
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4.3k
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Comment: C: bedtools intersect with match on name column
6.9 years ago by corend ▴ 70
5
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5
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4.3k
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bedtools intersect with match on name column
bedtools intersectbed
6.9 years ago by corend ▴ 70
1
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0
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4.3k
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Answer: A: bedtools intersect with match on name column
6.9 years ago by corend ▴ 70
0
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1
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4.3k
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Comment: C: bedtools intersect with match on name column
6.9 years ago by corend ▴ 70
8
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10
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5.3k
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Ballgown finds few DE genes compared to DESeq
RNA-Seq DESeq2 Ballgown
updated 7.0 years ago by • 0 • written 7.3 years ago by ▴ 70
0
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0
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6.8k
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Comment: C: What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment
7.0 years ago by corend ▴ 70
0
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0
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2.7k
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Comment: C: Mapping to repeat consensus sequences?
7.0 years ago by corend ▴ 70
1
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2
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2.7k
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Comment: C: Mapping to repeat consensus sequences?
7.0 years ago by corend ▴ 70
1
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0
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1.2k
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Answer: C: isolate the output of lignment in fastq format
7.0 years ago by corend ▴ 70
0
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0
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2.4k
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Comment: C: Why are GC% per base important in quality control of reads?
7.0 years ago by corend ▴ 70
0
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1
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3.7k
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Comment: C: RNA-seq analysis of two species
7.1 years ago by corend ▴ 70
0
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1
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3.7k
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Comment: C: RNA-seq analysis of two species
7.1 years ago by corend ▴ 70
0
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1
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3.7k
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Comment: C: RNA-seq analysis of two species
7.1 years ago by corend ▴ 70
5
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7
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2.6k
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RNAseq analysis with very close species
RNA-Seq
7.1 years ago by corend ▴ 70
0
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1
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2.6k
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Comment: C: RNAseq analysis with very close species
7.1 years ago by corend ▴ 70
0
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0
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2.6k
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Comment: C: RNAseq analysis with very close species
7.1 years ago by corend ▴ 70
0
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1
reply
2.6k
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Comment: C: RNAseq analysis with very close species
7.1 years ago by corend ▴ 70
0
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1
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4.9k
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Comment: C: Hisat2 multimapped reads
7.2 years ago by corend ▴ 70
0
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0
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4.9k
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Comment: C: Hisat2 multimapped reads
7.2 years ago by corend ▴ 70
2
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5
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4.9k
views
Hisat2 multimapped reads
RNA-Seq alignment hisat2
updated 7.2 years ago by 105k • written 7.2 years ago by ▴ 70
0
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0
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5.3k
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Comment: C: Ballgown finds few DE genes compared to DESeq
7.3 years ago by corend ▴ 70
0
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1
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5.3k
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Comment: C: Ballgown finds few DE genes compared to DESeq
7.3 years ago by corend ▴ 70
0
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0
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5.3k
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Comment: C: Ballgown finds few DE genes compared to DESeq
7.3 years ago by corend ▴ 70
0
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1
reply
5.6k
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Comment: C: A very short gene with very high TPM
7.7 years ago by corend ▴ 70
0
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1
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5.6k
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Comment: C: A very short gene with very high TPM
7.7 years ago by corend ▴ 70
10
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18
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5.6k
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6 follow
A very short gene with very high TPM
RNA-Seq Assembly
updated 7.7 years ago by 9.0k • written 7.7 years ago by ▴ 70
0
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0
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5.6k
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Comment: C: A very short gene with very high TPM
7.7 years ago by corend ▴ 70
0
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0
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5.6k
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Comment: C: A very short gene with very high TPM
7.7 years ago by corend ▴ 70
1
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1
reply
5.6k
views
Comment: C: A very short gene with very high TPM
7.7 years ago by corend ▴ 70
0
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2
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5.6k
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Comment: C: A very short gene with very high TPM
7.7 years ago by corend ▴ 70
0
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0
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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1
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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1
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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1
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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0
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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1
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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2
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
0
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1
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4.7k
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Comment: C: Why does cufflinks split this transcript?
7.8 years ago by corend ▴ 70
8
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20
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4.7k
views
Why does cufflinks split this transcript?
RNA-Seq cufflinks assembly
7.8 years ago by corend ▴ 70
3
votes
1
reply
2.3k
views
What is an "unanchored contig"?
sequencing Assembly
updated 7.8 years ago by 35k • written 7.8 years ago by ▴ 70
0
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1
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2.8k
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Comment: C: How to get an XS field in SAM with unstranded data ?
7.9 years ago by corend ▴ 70
4
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7
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2.8k
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How to get an XS field in SAM with unstranded data ?
cufflinks RNA-Seq alignment
updated 7.9 years ago by 9.0k • written 7.9 years ago by ▴ 70
0
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0
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2.8k
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Comment: C: How to get an XS field in SAM with unstranded data ?
7.9 years ago by corend ▴ 70
0
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0
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2.8k
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Comment: C: How to get an XS file in SAM with unstranded data ?
7.9 years ago by corend ▴ 70
0
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0
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2.2k
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Comment: C: DESeq2 biais when genes are missing from the annotation?
7.9 years ago by corend ▴ 70
0
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0
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2.2k
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Comment: C: DESeq2 biais when genes are missing from the annotation?
7.9 years ago by corend ▴ 70
4
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4
replies
2.2k
views
DESeq2 biais when genes are missing from the annotation?
RNA-Seq DESeq2
updated 7.9 years ago by 35k • written 7.9 years ago by ▴ 70
0
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1
reply
1.6k
views
Retrieve genes with more than N paralogs on ensembl
genome gene ensembl
updated 8.0 years ago by 27k • written 8.0 years ago by ▴ 70
0
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1
reply
2.4k
views
cummeRbund grouping by TSS / CDS / Isoforms
RNA-Seq cufflinks cummerbund
updated 8.0 years ago by ★ 4.2k • written 8.0 years ago by ▴ 70
51 results • Page 1 of 2
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