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1
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Comment:
Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
8 weeks ago by
Joel Wallenius
▴ 210
0
votes
1
reply
785
views
Comment:
Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
8 weeks ago by
Joel Wallenius
▴ 210
0
votes
0
replies
785
views
Comment:
Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
9 weeks ago by
Joel Wallenius
▴ 210
2
votes
6
replies
785
views
What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv
genomics
variation
snp
human
8 weeks ago by
Joel Wallenius
▴ 210
4
votes
8
replies
1.3k
views
Locating IBD candidates with just VCF files
Relatedness
Genotypes
IBD
Haplotypes
VCF
9 weeks ago by
Joel Wallenius
▴ 210
3
votes
0
replies
1.3k
views
Answer:
Answer: Locating IBD candidates with just VCF files
9 weeks ago by
Joel Wallenius
▴ 210
0
votes
1
reply
457
views
GATK's CNV-caller output, genotype code?
GATK
CNV
NGS
updated 12 weeks ago by
Rui Xu
• 0 • written 20 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
2.5k
views
Comment:
Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
7 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
2.5k
views
Comment:
Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
7 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
42k
views
Comment:
Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
7 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
42k
views
Comment:
Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
7 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
42k
views
Comment:
Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
7 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
42k
views
Comment:
Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
7 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
5.4k
views
Comment:
Comment: Calculating FPKM and TPM by hand from htseq-count output?
8 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
828
views
Comment:
Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
9 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
707
views
Comment:
Comment: Parallel GWAS?
10 months ago by
Joel Wallenius
▴ 210
0
votes
2
replies
707
views
Comment:
Comment: Parallel GWAS?
10 months ago by
Joel Wallenius
▴ 210
0
votes
6
replies
707
views
Parallel GWAS?
GWAS
Parallel
Chromosome
updated 10 months ago by
zx8754
11k • written 10 months ago by
Joel Wallenius
▴ 210
1
vote
1
reply
1.3k
views
Comment:
Comment: How to reconstruct a genome from a contigs file?
10 months ago by
Joel Wallenius
▴ 210
2
votes
1
reply
1.3k
views
Answer:
Answer: How to reconstruct a genome from a contigs file?
10 months ago by
Joel Wallenius
▴ 210
2
votes
4
replies
712
views
Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
Mapping
Variant-calling
masking
updated 10 months ago by
GenoMax
141k • written 11 months ago by
Joel Wallenius
▴ 210
2
votes
1
reply
712
views
Answer:
Answer: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
10 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
712
views
Comment:
Comment: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
11 months ago by
Joel Wallenius
▴ 210
2
votes
1
reply
964
views
Answer:
Answer: Retrieving allele-specific information for a variant using VEP annotation
11 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
3.6k
views
Comment:
Comment: samtools collate runs out of temporary storage space: no -T option!
11 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
377
views
What are the WES-specific settings when running GATK's variant recalibration step?
WES
GATK
recalibration
exome
11 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
1.3k
views
Comment:
Comment: Locating IBD candidates with just VCF files
17 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
1.3k
views
Comment:
Comment: Locating IBD candidates with just VCF files
17 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
1.3k
views
Comment:
Comment: Locating IBD candidates with just VCF files
17 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
332
views
A program that detects similar regions between samples in a multi-sample VCF file?
Relatedness
IBD
Haplotypes
18 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
18 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
279
views
How many SNPs are needed to perform haplotype analysis on siblings and their mother?
haplotype
linkage
SNP
pedigree
18 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
18 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
18 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
18 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
0
votes
2
replies
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
2.3k
views
Comment:
Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
19 months ago by
Joel Wallenius
▴ 210
2
votes
22
replies
2.3k
views
6 follow
Find ~1 Mb regions of genome that are shared by two or more WGS samples?
pedigree
linkage
genetics
18 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
1.1k
views
Comment:
Comment: Can you not phase exome data?
20 months ago by
Joel Wallenius
▴ 210
0
votes
1
reply
1.1k
views
Comment:
Comment: Can you not phase exome data?
20 months ago by
Joel Wallenius
▴ 210
5
votes
6
replies
1.1k
views
Can you not phase exome data?
phasing
shapeit
wes
exome
beagle
updated 20 months ago by
LauferVA
4.2k • written 20 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
744
views
Comment:
Comment: How to properly subset a bam file?
20 months ago by
Joel Wallenius
▴ 210
2
votes
2
replies
744
views
How to properly subset a bam file?
bam
subset
truncate
20 months ago by
Joel Wallenius
▴ 210
6
votes
7
replies
1.8k
views
Convert a BAM from GRCh37 to hg19?
GRCh37
hg19
BAM
updated 21 months ago by
Ram
43k • written 22 months ago by
Joel Wallenius
▴ 210
0
votes
0
replies
1.8k
views
Comment:
Comment: Convert a BAM from GRCh37 to hg19?
21 months ago by
Joel Wallenius
▴ 210
137 results • Page
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