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611
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Comment: Comment: Linkage disequilibrium estimation in unphased data?
7 weeks ago by Joel Wallenius ▴ 220
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1
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611
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Comment: Comment: Linkage disequilibrium estimation in unphased data?
8 weeks ago by Joel Wallenius ▴ 220
0
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4
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611
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Linkage disequilibrium estimation in unphased data?
correlation WES Pearson LD Kendall
7 weeks ago by Joel Wallenius ▴ 220
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4.3k
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Answer: Answer: Michigan imputation server error
4 months ago by Joel Wallenius ▴ 220
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1
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1.6k
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Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by Joel Wallenius ▴ 220
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1.6k
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Comment: Comment: Find "phased segments" from trio VCF?
7 months ago by Joel Wallenius ▴ 220
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3.1k
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Comment: Comment: Locating IBD candidates with just VCF files
7 months ago by Joel Wallenius ▴ 220
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0
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863
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Comment: Comment: WES and GBAP1
10 months ago by Joel Wallenius ▴ 220
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1
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863
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Comment: Comment: WES and GBAP1
10 months ago by Joel Wallenius ▴ 220
0
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0
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863
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Comment: Comment: WES and GBAP1
10 months ago by Joel Wallenius ▴ 220
0
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6
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863
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WES and GBAP1
wes homology gba ngs
10 months ago by Joel Wallenius ▴ 220
2
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2
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1.2k
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What are the WES-specific settings when running GATK's variant recalibration step?
WES GATK recalibration exome
updated 13 months ago by 153k • written 2.4 years ago by ▴ 220
1
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1.9k
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
19 months ago by Joel Wallenius ▴ 220
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1
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1.9k
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
19 months ago by Joel Wallenius ▴ 220
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0
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1.9k
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Comment: Comment: What is the expected number of common/mutual/shared SNVs between two, three, fou
19 months ago by Joel Wallenius ▴ 220
2
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6
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1.9k
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What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv genomics variation snp human
19 months ago by Joel Wallenius ▴ 220
5
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11
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3.1k
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Locating IBD candidates with just VCF files
Relatedness Genotypes IBD Haplotypes VCF
7 months ago by Joel Wallenius ▴ 220
3
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1
reply
3.1k
views
Answer: Answer: Locating IBD candidates with just VCF files
19 months ago by Joel Wallenius ▴ 220
0
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1
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912
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GATK's CNV-caller output, genotype code?
GATK CNV NGS
updated 20 months ago by • 0 • written 3.1 years ago by ▴ 220
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0
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3.7k
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Comment: Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
2.0 years ago by Joel Wallenius ▴ 220
0
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1
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3.7k
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Comment: Comment: Using ExomeDepth for GRCH38 processed samples to call CNVs
2.0 years ago by Joel Wallenius ▴ 220
0
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0
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47k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
2.0 years ago by Joel Wallenius ▴ 220
0
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1
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47k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
2.0 years ago by Joel Wallenius ▴ 220
0
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1
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47k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
2.0 years ago by Joel Wallenius ▴ 220
0
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1
reply
47k
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Comment: Comment: How To Get Bed File Containing Exons Of Canonical Transcripts And Their Correspo
2.0 years ago by Joel Wallenius ▴ 220
0
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0
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6.4k
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Comment: Comment: Calculating FPKM and TPM by hand from htseq-count output?
2.1 years ago by Joel Wallenius ▴ 220
0
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0
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1.6k
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Comment: Comment: Are there any ways to delete multiple jobs at Ensembl VEP?
2.2 years ago by Joel Wallenius ▴ 220
0
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1
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1.6k
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Comment: Comment: Parallel GWAS?
2.2 years ago by Joel Wallenius ▴ 220
0
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2
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1.6k
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Comment: Comment: Parallel GWAS?
2.2 years ago by Joel Wallenius ▴ 220
0
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6
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1.6k
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Parallel GWAS?
GWAS Parallel Chromosome
updated 2.2 years ago by 12k • written 2.2 years ago by ▴ 220
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1
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2.2k
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Comment: Comment: How to reconstruct a genome from a contigs file?
2.3 years ago by Joel Wallenius ▴ 220
2
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1
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2.2k
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Answer: Answer: How to reconstruct a genome from a contigs file?
2.3 years ago by Joel Wallenius ▴ 220
2
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4
replies
1.3k
views
Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
Mapping Variant-calling masking
updated 2.3 years ago by 153k • written 2.3 years ago by ▴ 220
2
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1
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1.3k
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Answer: Answer: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
2.3 years ago by Joel Wallenius ▴ 220
0
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0
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1.3k
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Comment: Comment: Upstream pseudogene causing MAPQ 0 and exclusion during variant calling
2.3 years ago by Joel Wallenius ▴ 220
2
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1
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1.7k
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Answer: Answer: Retrieving allele-specific information for a variant using VEP annotation
2.3 years ago by Joel Wallenius ▴ 220
0
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0
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4.5k
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Comment: Comment: samtools collate runs out of temporary storage space: no -T option!
2.4 years ago by Joel Wallenius ▴ 220
0
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1
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3.1k
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Comment: Comment: Locating IBD candidates with just VCF files
2.8 years ago by Joel Wallenius ▴ 220
0
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1
reply
3.1k
views
Comment: Comment: Locating IBD candidates with just VCF files
2.8 years ago by Joel Wallenius ▴ 220
0
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1
reply
3.1k
views
Comment: Comment: Locating IBD candidates with just VCF files
2.8 years ago by Joel Wallenius ▴ 220
0
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0
replies
617
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A program that detects similar regions between samples in a multi-sample VCF file?
Relatedness IBD Haplotypes
2.9 years ago by Joel Wallenius ▴ 220
0
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0
replies
4.1k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.9 years ago by Joel Wallenius ▴ 220
0
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0
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534
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How many SNPs are needed to perform haplotype analysis on siblings and their mother?
haplotype linkage SNP pedigree
2.9 years ago by Joel Wallenius ▴ 220
0
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1
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4.1k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.9 years ago by Joel Wallenius ▴ 220
0
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0
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4.1k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3.0 years ago by Joel Wallenius ▴ 220
0
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1
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4.1k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3.0 years ago by Joel Wallenius ▴ 220
0
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1
reply
4.1k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3.0 years ago by Joel Wallenius ▴ 220
0
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1
reply
4.1k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3.0 years ago by Joel Wallenius ▴ 220
0
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0
replies
4.1k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3.0 years ago by Joel Wallenius ▴ 220
0
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0
replies
4.1k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3.0 years ago by Joel Wallenius ▴ 220
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