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0
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Adding shapes from plotly R library to the phylogenetic tree tips generated by ggtree
R phylogenetic-tree ggtree plotly
updated 8 weeks ago by 43k • written 8 weeks ago by ▴ 110
3
votes
7
replies
2.3k
views
Can we compare two LD decay curves by statistical test to say they are different?
R statistics SNP
3.9 years ago by Hann ▴ 110
0
votes
4
replies
734
views
How to remove characters after specific symbol from all columns, and make all charachters sperated by space and comma except the first column
bash
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 110
3
votes
14
replies
1.0k
views
For each row retain the cell with maximum value in R
R
updated 3.9 years ago by 82k • written 3.9 years ago by ▴ 110
2
votes
1
reply
2.4k
views
The difference between singletons SNPs vs SNPs have MAF less than or equal 0.01
SNP sequencing population genetics
4.0 years ago by Hann ▴ 110
0
votes
1
reply
604
views
What can you do with whole genome sequecing by illumina of a crop population
next-gen sequencing genome
4.1 years ago by Hann ▴ 110
0
votes
3
replies
733
views
Order file based on another file
R bash
4.4 years ago by Hann ▴ 110
5
votes
3
replies
12k
views
Saving high quality image in R
R
updated 4.4 years ago by 19k • written 4.4 years ago by ▴ 110
1
vote
2
replies
3.3k
views
Output the results of samtools flagstat of 180 bam files in one text file
for loop shell alignment genome
updated 4.4 years ago by 161k • written 4.4 years ago by ▴ 110
5
votes
2
replies
2.2k
views
How to check how much loading each SNP had on the first or second principal component
SNP PCA
updated 4.5 years ago by 10k • written 4.5 years ago by ▴ 110
3
votes
4
replies
1.4k
views
Run R script on 100 files using for loop
R
4.5 years ago by Hann ▴ 110
2
votes
4
replies
3.0k
views
calculate the average of column 7 if the rows of column 2 have the same value
bash shell
4.5 years ago by Hann ▴ 110
3
votes
5
replies
1.5k
views
Is it possible to get a subset of VCF file every 10 Mbp across a particular chromosomes
snp
4.5 years ago by Hann ▴ 110
1
vote
4
replies
1.3k
views
What causes some individuals to be separated clusters from the population the in PCA
SNP population genetics PCA
4.5 years ago by Hann ▴ 110
0
votes
1
reply
781
views
How to calculate the density of alternative alleles as a ratio in a window of 10 kb
SNP
4.5 years ago by Hann ▴ 110
4
votes
3
replies
2.5k
views
How to sort the Q matrix from structure analyses based on countires first and then within the countires sort by q value
R population genetics
updated 4.6 years ago by 20 • written 4.8 years ago by ▴ 110
0
votes
0
replies
3.1k
views
mantel test in vegan r package
r R
4.6 years ago by Hann ▴ 110
0
votes
0
replies
766
views
Statistical test to test the relationship between genetic strucutre and climate variables
SNP population genetics R
4.7 years ago by Hann ▴ 110
1
vote
1
reply
4.9k
views
What is the diffeernce between singletons and doubletons - VCFtools
SNP population genetics
4.7 years ago by Hann ▴ 110
0
votes
1
reply
1.4k
views
Tess3r package, Barplots: How to have a specific color for each cluster and assign a new color to the new cluster when plotting higher K
R population genetics
4.8 years ago by Hann ▴ 110
0
votes
2
replies
1.5k
views
How to find matching strings from two files, and if they match take the whole line/row in R
R
updated 4.8 years ago by ★ 3.8k • written 4.8 years ago by ▴ 110
0
votes
0
replies
707
views
Is it possible to find synteny between two subgenomes using a subset of annotation file
gene genomics
4.8 years ago by Hann ▴ 110
1
vote
3
replies
1.0k
views
How can I confirm that detection of selective sweep is not by chance?
population genetics genomics selection
4.8 years ago by Hann ▴ 110
1
vote
2
replies
1.5k
views
Detection of selection by calculating nucleotide diversity ratio (pi) pi wild/pi cultivated
population genetics genomics selection
4.8 years ago by Hann ▴ 110
3
votes
2
replies
2.8k
views
How to calculate the ratio of nucleotide diversity (pi) between two population in each window
bash R population genetics
updated 4.8 years ago by 3.9k • written 4.8 years ago by ▴ 110
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