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Comment: C: add gene names in bed file
6.7 years ago by Tania ▴ 180
4
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5
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add gene names in bed file
BED annotations
updated 6.7 years ago by 36k • written 6.7 years ago by ▴ 180
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Comment: C: add gene names in bed file
6.7 years ago by Tania ▴ 180
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2.0k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
6.7 years ago by Tania ▴ 180
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Comment: C: How low is OK to accept variants in high/low GC content regions?
6.7 years ago by Tania ▴ 180
0
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1
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2.0k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
6.7 years ago by Tania ▴ 180
0
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1
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2.0k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
6.7 years ago by Tania ▴ 180
0
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1
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2.0k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
6.7 years ago by Tania ▴ 180
6
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11
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2.0k
views
How low is OK to accept variants in high/low GC content regions?
VCF Exome sequencing
updated 6.7 years ago by 88k • written 6.7 years ago by ▴ 180
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1.5k
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Comment: C: cufflinks transcripts to ensemble or NCBI transcript
6.7 years ago by Tania ▴ 180
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1
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1.5k
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Comment: C: cufflinks transcripts to ensemble or NCBI transcript
6.7 years ago by Tania ▴ 180
0
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1
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1.5k
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Comment: C: cufflinks transcripts to ensemble or NCBI transcript
6.7 years ago by Tania ▴ 180
3
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4
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4.1k
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CosmicCodingMuts.vcf.gz for hg38?
RNA-Seq SomaticMutations
updated 6.8 years ago by 20 • written 6.9 years ago by ▴ 180
1
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1.4k
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Comment: C: Should we ignore variants in any duplicated gene, or only ignore variants in dup
6.8 years ago by Tania ▴ 180
5
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3
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1.4k
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Should we ignore variants in any duplicated gene, or only ignore variants in duplicated segments?
Variant calling
6.8 years ago by Tania ▴ 180
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0
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1.5k
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Comment: C: Is there a full one link for exome raw fastq to vcf pipleine in gatk?
6.8 years ago by Tania ▴ 180
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4
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1.5k
views
Is there a full one link for exome raw fastq to vcf pipleine in gatk?
exome data variant calling
updated 6.8 years ago by 164k • written 6.8 years ago by ▴ 180
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0
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1.5k
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Comment: C: Is there a full one link for exome raw fastq to vcf pipleine in gatk?
6.8 years ago by Tania ▴ 180
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0
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7.3k
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Comment: A: Is there a better tool for visualizing your variants after annotation than Excel
6.8 years ago by Tania ▴ 180
20
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26
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7.3k
views
9 follow
Is there a better tool for visualizing your variants after annotation than Excel?
annotations variants
updated 2.4 years ago by 164k • written 6.9 years ago by ▴ 180
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7.3k
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Comment: C: Is there a better tool for visualizing your variants after annotation than Excel
6.9 years ago by Tania ▴ 180
0
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1
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7.3k
views
Comment: C: Is there a better tool for visualizing your variants after annotation than Excel
6.9 years ago by Tania ▴ 180
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0
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3.0k
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Comment: C: Can't find a pattern in heatmap, is it okay?
6.9 years ago by Tania ▴ 180
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1
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3.0k
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Comment: C: Can't find a pattern in heatmap, is it okay?
6.9 years ago by Tania ▴ 180
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1
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3.0k
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Comment: C: Can't find a pattern in heatmap, is it okay?
6.9 years ago by Tania ▴ 180
5
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10
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3.0k
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Can't find a pattern in heatmap, is it okay?
RNA-Seq heatmap
6.9 years ago by Tania ▴ 180
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1
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3.0k
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Comment: C: Can't find a pattern in heatmap, is it okay?
6.9 years ago by Tania ▴ 180
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0
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3.0k
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Comment: C: Can't find a pattern in heatmap, is it okay?
6.9 years ago by Tania ▴ 180
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0
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1.8k
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Can we omit the normal input and compare tumor to pon only in MuTect2?
Tumor RNA-Seq mutect
6.9 years ago by Tania ▴ 180
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4.1k
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Comment: C: CosmicCodingMuts.vcf.gz for hg38?
6.9 years ago by Tania ▴ 180
0
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0
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4.1k
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Comment: C: CosmicCodingMuts.vcf.gz for hg38?
6.9 years ago by Tania ▴ 180
1
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11
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2.3k
views
pvalues very low in Salmon and edgeR
RNA-Seq
updated 7.0 years ago by 20 • written 7.1 years ago by ▴ 180
1
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1
reply
1.0k
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Low frequent variants in SINE regions?
Variants SINE-Region
updated 2.6 years ago by 44k • written 7.0 years ago by ▴ 180
1
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7
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2.4k
views
BBMap output meaning
bbmap rnaseq
updated 7.0 years ago by 20 • written 7.2 years ago by ▴ 180
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1
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2.0k
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Comment: C: Interpretation for lowfrevariant
7.0 years ago by Tania ▴ 180
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1
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2.0k
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Comment: C: Interpretation for lowfrevariant
7.0 years ago by Tania ▴ 180
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1
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2.0k
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Comment: C: Interpretation for lowfrevariant
7.0 years ago by Tania ▴ 180
5
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14
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2.0k
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Interpretation for lowfrevariant
vcf
7.0 years ago by Tania ▴ 180
0
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0
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2.8k
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Comment: C: NA in pathways gage values
7.0 years ago by Tania ▴ 180
0
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3
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2.8k
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NA in pathways gage values
Pathways
updated 12 months ago by • 0 • written 7.0 years ago by ▴ 180
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0
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2.5k
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Comment: C: Up and down pathways are the same?
7.0 years ago by Tania ▴ 180
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0
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2.5k
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Comment: C: Up and down pathways are the same?
7.0 years ago by Tania ▴ 180
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1
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2.5k
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Comment: C: Up and down pathways are the same?
7.0 years ago by Tania ▴ 180
0
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2
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2.5k
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Comment: C: Up and down pathways are the same?
7.0 years ago by Tania ▴ 180
9
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8
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2.5k
views
Up and down pathways are the same?
pathways gage
updated 7.0 years ago by 27k • written 7.0 years ago by ▴ 180
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0
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2.9k
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Comment: C: Can't fetch pathways by entrez id?
7.0 years ago by Tania ▴ 180
0
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2
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2.9k
views
Comment: C: Can't fetch pathways by entrez id?
7.0 years ago by Tania ▴ 180
0
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1
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2.9k
views
Comment: C: Can't fetch pathways by entrez id?
7.0 years ago by Tania ▴ 180
0
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1
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2.9k
views
Comment: C: Can't fetch pathways by entrez id?
7.0 years ago by Tania ▴ 180
4
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9
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2.9k
views
Can't fetch pathways by entrez id?
Gage Pathways
7.0 years ago by Tania ▴ 180
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