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Comment: C: add gene names in bed file
7.2 years ago by Tania ▴ 180
4
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5
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4.2k
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add gene names in bed file
BED annotations
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 180
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Comment: C: add gene names in bed file
7.2 years ago by Tania ▴ 180
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0
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2.3k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
7.2 years ago by Tania ▴ 180
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1
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2.3k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
7.2 years ago by Tania ▴ 180
0
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1
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2.3k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
7.2 years ago by Tania ▴ 180
0
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1
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2.3k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
7.2 years ago by Tania ▴ 180
0
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1
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2.3k
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Comment: C: How low is OK to accept variants in high/low GC content regions?
7.2 years ago by Tania ▴ 180
6
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11
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2.3k
views
How low is OK to accept variants in high/low GC content regions?
VCF Exome sequencing
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 180
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0
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1.7k
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Comment: C: cufflinks transcripts to ensemble or NCBI transcript
7.2 years ago by Tania ▴ 180
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1
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1.7k
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Comment: C: cufflinks transcripts to ensemble or NCBI transcript
7.2 years ago by Tania ▴ 180
0
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1
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1.7k
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Comment: C: cufflinks transcripts to ensemble or NCBI transcript
7.2 years ago by Tania ▴ 180
3
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4
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4.5k
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CosmicCodingMuts.vcf.gz for hg38?
RNA-Seq SomaticMutations
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 180
1
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0
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1.6k
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Comment: C: Should we ignore variants in any duplicated gene, or only ignore variants in dup
7.3 years ago by Tania ▴ 180
5
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3
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1.6k
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Should we ignore variants in any duplicated gene, or only ignore variants in duplicated segments?
Variant calling
7.3 years ago by Tania ▴ 180
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0
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1.7k
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Comment: C: Is there a full one link for exome raw fastq to vcf pipleine in gatk?
7.4 years ago by Tania ▴ 180
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4
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1.7k
views
Is there a full one link for exome raw fastq to vcf pipleine in gatk?
exome data variant calling
updated 7.4 years ago by 166k • written 7.4 years ago by ▴ 180
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0
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1.7k
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Comment: C: Is there a full one link for exome raw fastq to vcf pipleine in gatk?
7.4 years ago by Tania ▴ 180
20
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26
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8.4k
views
9 follow
Is there a better tool for visualizing your variants after annotation than Excel?
annotations variants
updated 2.9 years ago by 166k • written 7.4 years ago by ▴ 180
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0
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8.4k
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Comment: A: Is there a better tool for visualizing your variants after annotation than Excel
7.4 years ago by Tania ▴ 180
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0
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8.4k
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Comment: C: Is there a better tool for visualizing your variants after annotation than Excel
7.4 years ago by Tania ▴ 180
0
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1
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8.4k
views
Comment: C: Is there a better tool for visualizing your variants after annotation than Excel
7.4 years ago by Tania ▴ 180
0
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0
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3.3k
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Comment: C: Can't find a pattern in heatmap, is it okay?
7.4 years ago by Tania ▴ 180
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1
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3.3k
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Comment: C: Can't find a pattern in heatmap, is it okay?
7.4 years ago by Tania ▴ 180
0
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1
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3.3k
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Comment: C: Can't find a pattern in heatmap, is it okay?
7.4 years ago by Tania ▴ 180
5
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10
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3.3k
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Can't find a pattern in heatmap, is it okay?
RNA-Seq heatmap
7.4 years ago by Tania ▴ 180
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1
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3.3k
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Comment: C: Can't find a pattern in heatmap, is it okay?
7.4 years ago by Tania ▴ 180
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0
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3.3k
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Comment: C: Can't find a pattern in heatmap, is it okay?
7.4 years ago by Tania ▴ 180
0
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0
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1.9k
views
Can we omit the normal input and compare tumor to pon only in MuTect2?
Tumor RNA-Seq mutect
7.4 years ago by Tania ▴ 180
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0
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4.5k
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Comment: C: CosmicCodingMuts.vcf.gz for hg38?
7.4 years ago by Tania ▴ 180
0
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0
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4.5k
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Comment: C: CosmicCodingMuts.vcf.gz for hg38?
7.4 years ago by Tania ▴ 180
1
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11
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2.6k
views
pvalues very low in Salmon and edgeR
RNA-Seq
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 180
1
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1
reply
1.1k
views
Low frequent variants in SINE regions?
Variants SINE-Region
updated 3.1 years ago by 45k • written 7.5 years ago by ▴ 180
1
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7
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2.6k
views
BBMap output meaning
bbmap rnaseq
updated 7.5 years ago by 20 • written 7.7 years ago by ▴ 180
0
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1
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2.3k
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Comment: C: Interpretation for lowfrevariant
7.5 years ago by Tania ▴ 180
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1
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2.3k
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Comment: C: Interpretation for lowfrevariant
7.5 years ago by Tania ▴ 180
0
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1
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2.3k
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Comment: C: Interpretation for lowfrevariant
7.5 years ago by Tania ▴ 180
5
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14
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2.3k
views
Interpretation for lowfrevariant
vcf
7.5 years ago by Tania ▴ 180
0
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0
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3.0k
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Comment: C: NA in pathways gage values
7.5 years ago by Tania ▴ 180
0
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3
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3.0k
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NA in pathways gage values
Pathways
updated 18 months ago by • 0 • written 7.5 years ago by ▴ 180
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0
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2.8k
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Comment: C: Up and down pathways are the same?
7.5 years ago by Tania ▴ 180
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0
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2.8k
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Comment: C: Up and down pathways are the same?
7.5 years ago by Tania ▴ 180
0
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1
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2.8k
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Comment: C: Up and down pathways are the same?
7.5 years ago by Tania ▴ 180
0
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2
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2.8k
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Comment: C: Up and down pathways are the same?
7.5 years ago by Tania ▴ 180
9
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8
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2.8k
views
Up and down pathways are the same?
pathways gage
updated 7.5 years ago by 27k • written 7.5 years ago by ▴ 180
0
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0
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3.2k
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Comment: C: Can't fetch pathways by entrez id?
7.5 years ago by Tania ▴ 180
0
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2
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3.2k
views
Comment: C: Can't fetch pathways by entrez id?
7.5 years ago by Tania ▴ 180
0
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1
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3.2k
views
Comment: C: Can't fetch pathways by entrez id?
7.5 years ago by Tania ▴ 180
0
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1
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3.2k
views
Comment: C: Can't fetch pathways by entrez id?
7.5 years ago by Tania ▴ 180
4
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9
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3.2k
views
Can't fetch pathways by entrez id?
Gage Pathways
7.5 years ago by Tania ▴ 180
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