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Answer: Answer: How to annotate gene names for genomic coordinates?
2.9 years ago by jaafari.omid ▴ 80
0
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4
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2.9k
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How to do AMOVA on GBS data
SNP genome R GBS
updated 3.3 years ago by • 0 • written 6.3 years ago by ▴ 80
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0
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1.4k
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Comment: Comment: Fis, Ho and He calculation from Whole Genome Seq data
4.0 years ago by jaafari.omid ▴ 80
0
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0
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759
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How should we replace NAs from a genelight object?
R glpca adegenet GBS SNP
4.0 years ago by jaafari.omid ▴ 80
0
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2
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1.4k
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Fis, Ho and He calculation from Whole Genome Seq data
SNP R genome
4.0 years ago by jaafari.omid ▴ 80
0
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0
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1.4k
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Comment: C: Keep just chromosomes in a .bam file
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 80
0
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1
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1.4k
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Comment: C: Keep just chromosomes in a .bam file
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 80
1
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5
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1.4k
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Keep just chromosomes in a .bam file
genome next-gen assembly snp alignment
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 80
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1
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1.4k
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Comment: C: Keep just chromosomes in a .bam file
5.2 years ago by jaafari.omid ▴ 80
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0
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3.0k
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Comment: C: Allele frequency visualization
5.3 years ago by jaafari.omid ▴ 80
0
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0
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955
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Allele frequency comparison between pairs of populations
SNP next-gen Allele frequency software error
5.3 years ago by jaafari.omid ▴ 80
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0
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3.6k
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Comment: C: How to merge different BAM files?
5.5 years ago by jaafari.omid ▴ 80
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1
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3.6k
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Comment: C: How to merge different BAM files?
5.5 years ago by jaafari.omid ▴ 80
0
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5
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3.6k
views
How to merge different BAM files?
SNP next-gen alignment BAM SAMtools
updated 5.5 years ago by 14k • written 5.5 years ago by ▴ 80
0
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0
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1.1k
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Fst Visulization from WGS data
R SNP next-gen WGS Fst
5.6 years ago by jaafari.omid ▴ 80
1
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0
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1.3k
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Comment: C: How should we merge the Chromosome and position columns of a vcf and or .map fil
5.9 years ago by jaafari.omid ▴ 80
2
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2
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1.3k
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How should we merge the Chromosome and position columns of a vcf and or .map file to have the ID column without dots?
SNP vcf plink
updated 5.9 years ago by 47k • written 5.9 years ago by ▴ 80
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1
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4.5k
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Comment: C: rename samples in a vcf or plink file
5.9 years ago by jaafari.omid ▴ 80
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0
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4.5k
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Comment: C: rename samples in a vcf or plink file
5.9 years ago by jaafari.omid ▴ 80
0
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0
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4.5k
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Comment: C: rename samples in a vcf or plink file
5.9 years ago by jaafari.omid ▴ 80
8
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6
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4.5k
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rename samples in a vcf or plink file
snp vcf plink
updated 5.9 years ago by 47k • written 5.9 years ago by ▴ 80
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0
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1.1k
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Error in GWAS using GenABEL package
SNP R genome next-gen GWAS
5.9 years ago by jaafari.omid ▴ 80
1
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0
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5.4k
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Comment: C: Depth of coverage
6.2 years ago by jaafari.omid ▴ 80
0
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1
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5.4k
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Comment: C: Depth of coverage
6.2 years ago by jaafari.omid ▴ 80
0
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1
reply
5.4k
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Comment: C: Depth of coverage
6.2 years ago by jaafari.omid ▴ 80
2
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6
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5.4k
views
Depth of coverage
snp next-gen genome vcf sequence
6.2 years ago by jaafari.omid ▴ 80
1
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0
replies
48k
views
Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
6.2 years ago by jaafari.omid ▴ 80
1
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1
reply
48k
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Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
6.2 years ago by jaafari.omid ▴ 80
4
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5
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3.0k
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Allele frequency visualization
snp R stacks vcftools
updated 23 months ago by • 0 • written 6.4 years ago by ▴ 80
0
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1
reply
1.9k
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Comment: C: vcfR for Whole Genome Data
6.2 years ago by jaafari.omid ▴ 80
1
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3
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1.9k
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vcfR for Whole Genome Data
snp genome R VCF vcfR
6.2 years ago by jaafari.omid ▴ 80
0
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0
replies
3.5k
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Comment: C: VCF file filtration
6.2 years ago by jaafari.omid ▴ 80
0
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1
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3.5k
views
Comment: C: VCF file filtration
6.2 years ago by jaafari.omid ▴ 80
1
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1
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3.5k
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Comment: C: VCF file filtration
6.2 years ago by jaafari.omid ▴ 80
0
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2
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3.5k
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Comment: C: VCF file filtration
6.2 years ago by jaafari.omid ▴ 80
0
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2
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3.5k
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Comment: C: VCF file filtration
6.2 years ago by jaafari.omid ▴ 80
0
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1
reply
3.5k
views
Comment: C: VCF file filtration
6.2 years ago by jaafari.omid ▴ 80
4
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14
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3.5k
views
VCF file filtration
snp WGS VCF bcftools vcftools
6.2 years ago by jaafari.omid ▴ 80
0
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0
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6.2k
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Comment: C: Calling SNPs using bcftools mpileup
6.2 years ago by jaafari.omid ▴ 80
6
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6
replies
6.2k
views
Calling SNPs using bcftools mpileup
snp genome bcftools-mpileup WGS SNP calling
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 80
0
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1
reply
6.2k
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Comment: A: Calling SNPs using bcftools mpileup
6.2 years ago by jaafari.omid ▴ 80
0
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0
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6.2k
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Comment: C: Calling SNPs using bcftools mpileup
6.2 years ago by jaafari.omid ▴ 80
0
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1
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2.9k
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Comment: C: How to do AMOVA on GBS data
6.3 years ago by jaafari.omid ▴ 80
1
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3
replies
1.7k
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Manhattan plot from GBS data
SNP
updated 6.4 years ago by 20 • written 6.5 years ago by ▴ 80
0
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4
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3.6k
views
manhattan plot with Fst values
SNP software error
updated 6.4 years ago by 45k • written 6.4 years ago by ▴ 80
0
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1
reply
3.6k
views
Comment: C: manhattan plot with Fst values
updated 6.4 years ago by 45k • written 6.4 years ago by ▴ 80
0
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0
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2.9k
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Comment: C: How to perform VennDiagram from a VCF file?
6.5 years ago by jaafari.omid ▴ 80
0
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1
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2.9k
views
Comment: C: How to perform VennDiagram from a VCF file?
6.5 years ago by jaafari.omid ▴ 80
0
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1
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2.9k
views
Comment: C: How to perform VennDiagram from a VCF file?
6.5 years ago by jaafari.omid ▴ 80
0
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6
replies
2.9k
views
How to perform VennDiagram from a VCF file?
SNP genome VennDiagram
updated 6.5 years ago by ▴ 140 • written 6.5 years ago by ▴ 80
64 results • Page 1 of 2
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