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Comment: C: Adding a gene to a GTF file
4.6 years ago by science_lizard ▴ 20
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2.7k
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Comment: C: Adding a gene to a GTF file
4.6 years ago by science_lizard ▴ 20
0
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1
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2.7k
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Comment: C: Adding a gene to a GTF file
4.6 years ago by science_lizard ▴ 20
0
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1
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2.7k
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Comment: C: Adding a gene to a GTF file
4.6 years ago by science_lizard ▴ 20
0
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8
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2.7k
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Adding a gene to a GTF file
RNA-Seq
4.6 years ago by science_lizard ▴ 20
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4.8k
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Comment: C: Best normalization method to use with ChIP-seq counts
5.1 years ago by science_lizard ▴ 20
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4.8k
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Comment: C: Best normalization method to use with ChIP-seq counts
5.1 years ago by science_lizard ▴ 20
4
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4
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4.8k
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Best normalization method to use with ChIP-seq counts
chip-seq normalization counts featurecounts edger
updated 5.1 years ago by 89k • written 5.1 years ago by ▴ 20
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5.3k
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Comment: C: how to format the featurecounts output ?
5.2 years ago by science_lizard ▴ 20
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1.2k
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Extend ChIP-seq peaks to known Restriction Enzyme Digest Sites?
ChIP-Seq peak calling macs2 homer
5.2 years ago by science_lizard ▴ 20
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1.6k
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Comment: C: Is it acceptable to use different FDR cutoffs for peak calling in different ChIP
5.2 years ago by science_lizard ▴ 20
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2
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1.6k
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Is it acceptable to use different FDR cutoffs for peak calling in different ChIP-seq experiments (with same antibody)?
ChIP-Seq FDR peak calling homer statistics
updated 5.2 years ago by 4.2k • written 5.2 years ago by ▴ 20
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0
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5.3k
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Comment: C: Correlate ChIP-seq to gene expression
5.2 years ago by science_lizard ▴ 20
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1
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5.3k
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Comment: C: Correlate ChIP-seq to gene expression
5.2 years ago by science_lizard ▴ 20
3
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7
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5.3k
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Correlate ChIP-seq to gene expression
ChIP-Seq RNA-Seq correlation featurecounts counts
updated 5.2 years ago by ▴ 940 • written 5.2 years ago by ▴ 20
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1
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5.3k
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Comment: C: Correlate ChIP-seq to gene expression
5.2 years ago by science_lizard ▴ 20
0
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1
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3.2k
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Comment: C: STAR multiple FASTQ alignment, can you use with a variable $?
5.2 years ago by science_lizard ▴ 20
0
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0
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1.2k
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Answer: A: RNA-seq and histone modifictaion
5.2 years ago by science_lizard ▴ 20
0
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1
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3.2k
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Comment: C: STAR multiple FASTQ alignment, can you use with a variable $?
5.2 years ago by science_lizard ▴ 20
4
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5
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3.2k
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STAR multiple FASTQ alignment, can you use with a variable $?
RNA-seq STAR Alignment bash variable
5.2 years ago by science_lizard ▴ 20
0
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1
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1.4k
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Comment: A: ATAC-Seq Data looking like RNA-Seq data...?
5.2 years ago by science_lizard ▴ 20
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0
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2.9k
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Answer: A: fastqc result: whether trim off low quality reads or not
5.2 years ago by science_lizard ▴ 20
0
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0
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2.3k
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Which GTF file to use for FeatureCounts and STAR: low percent of assigned reads with primary assembly but higher with main annotation file
RNA-Seq alignment assembly
5.2 years ago by science_lizard ▴ 20
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0
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45k
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Comment: C: How To Filter Multi Fasta By Length??
6.4 years ago by science_lizard ▴ 20
1
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2
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1.6k
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ChIP-seq enrichment over specific genes
ChIP-Seq
updated 6.7 years ago by 8.3k • written 6.7 years ago by ▴ 20
1
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1
reply
1.9k
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Find adapter sequences
adapter fasta fastq sequencing fastqc
7.2 years ago by science_lizard ▴ 20
1
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1
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2.0k
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Upsampling BAMs, or downsampling by A LOT?
ChIP-Seq samtools bam downsampling upsampling
7.6 years ago by science_lizard ▴ 20
0
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0
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7.2k
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Comment: C: Error in RCircos.Validate.Genomic.Data
7.8 years ago by science_lizard ▴ 20
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