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Comment: Comment: How to get specific information from a list of PDB ID and save all in a spreadsh
3.6 years ago by Shred ★ 1.6k
1
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1
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1.4k
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Comment: Comment: lncRNA analysis
3.6 years ago by Shred ★ 1.6k
0
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0
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940
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Comment: Comment: why Mutect2 calls some germline variants as somatic ones?
3.7 years ago by Shred ★ 1.6k
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0
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1.2k
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Comment: Comment: 3' mRNAseq Bioinformatic Considerations (bulk RNAseq)
3.7 years ago by Shred ★ 1.6k
1
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0
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1.5k
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Answer: Answer: How to change gene coordinate in gtf file?
3.7 years ago by Shred ★ 1.6k
1
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0
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1.3k
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Answer: Answer: Is there a tool available to check a Tm for a DNA fragment or sequence?
3.7 years ago by Shred ★ 1.6k
0
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0
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3.3k
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Comment: Comment: featureCounts parameters
3.7 years ago by Shred ★ 1.6k
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0
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3.3k
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Comment: Comment: featureCounts parameters
3.7 years ago by Shred ★ 1.6k
1
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0
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5.8k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
3.7 years ago by Shred ★ 1.6k
0
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1
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3.3k
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Comment: Comment: featureCounts parameters
3.7 years ago by Shred ★ 1.6k
0
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2
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3.3k
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Comment: Comment: featureCounts parameters
3.7 years ago by Shred ★ 1.6k
0
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1
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2.2k
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Comment: Comment: How can I bring similar columns from two different tables side by side?
3.7 years ago by Shred ★ 1.6k
0
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0
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2.7k
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Answer: Answer: Help with writing a loop for metaspades assembler (beginner)
3.7 years ago by Shred ★ 1.6k
1
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1
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6.2k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.7 years ago by Shred ★ 1.6k
1
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1
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6.2k
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Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.7 years ago by Shred ★ 1.6k
1
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0
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6.2k
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Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
3.7 years ago by Shred ★ 1.6k
0
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0
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2.8k
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Answer: Answer: Converting A Long List of Ensembl IDs to Gene Symbols
3.7 years ago by Shred ★ 1.6k
1
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1
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884
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Answer: Answer: Extracting the mapped sequence of a certian gene
3.7 years ago by Shred ★ 1.6k
0
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0
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1.6k
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Comment: Comment: Gene Enrichment
3.8 years ago by Shred ★ 1.6k
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0
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1.6k
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Answer: Answer: Gene Enrichment
3.8 years ago by Shred ★ 1.6k
0
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0
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1.5k
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
3.8 years ago by Shred ★ 1.6k
0
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1
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1.5k
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Comment: Comment: Which file types are needed to represent the genotype in a phenotype - genotype
3.8 years ago by Shred ★ 1.6k
1
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2
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4.0k
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Answer: Answer: Can't convert dog ensembl IDs into gene names
3.9 years ago by Shred ★ 1.6k
0
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0
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1.1k
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Comment: Comment: How does gexpr function in ballgown package calculate the gene expression level
3.9 years ago by Shred ★ 1.6k
3
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5
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3.9k
views
Tool: Extend 3' UTR of a GTF file
annotation python RNA-Seq GTF
updated 2.4 years ago by 45k • written 5.1 years ago by ★ 1.6k
2
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0
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1.7k
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Answer: Answer: How to extract all sequences mapped to a transcript from Kallisto output
4.1 years ago by Shred ★ 1.6k
0
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0
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1.4k
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Comment: Comment: Error when opening CEL files in python
4.1 years ago by Shred ★ 1.6k
0
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1
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1.5k
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Comment: Comment: Cutoff value for shrunken logFC
4.2 years ago by Shred ★ 1.6k
0
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1
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1.6k
views
Comment: Comment: Interpreting read coverage over gene body plot
4.2 years ago by Shred ★ 1.6k
0
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0
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1.6k
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Comment: Comment: Handle inflated log2FC while using interaction term in DESeq2
4.2 years ago by Shred ★ 1.6k
0
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3
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1.6k
views
Handle inflated log2FC while using interaction term in DESeq2
RNAseq DESeq2 R
4.2 years ago by Shred ★ 1.6k
2
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0
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5.4k
views
Answer: Answer: From amino acid sequence to DNA sequence using Reverse Translate software
4.2 years ago by Shred ★ 1.6k
1
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0
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5.3k
views
Comment: Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
4.3 years ago by Shred ★ 1.6k
2
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1
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5.3k
views
Answer: Answer: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
4.3 years ago by Shred ★ 1.6k
1
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0
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2.1k
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Comment: Comment: Single-End to reduce cost for Differential Expression Analysis ?
4.3 years ago by Shred ★ 1.6k
1
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0
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12k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
4.3 years ago by Shred ★ 1.6k
2
votes
0
replies
780
views
Stringtie on non model organism - how to best proceed for DE analysis?
Salmon Stringtie DESeq transcriptome rna-seq
4.3 years ago by Shred ★ 1.6k
0
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1
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1.3k
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Comment: Comment: CPM and FPKM for machine learning
4.3 years ago by Shred ★ 1.6k
0
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0
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3.7k
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Comment: Comment: Convert MSTRG gene IDs to real one?
4.4 years ago by Shred ★ 1.6k
0
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1
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3.7k
views
Answer: Answer: Convert MSTRG gene IDs to real one?
4.4 years ago by Shred ★ 1.6k
2
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1
reply
7.6k
views
Answer: Answer: HIV virus - GTF annonation
4.4 years ago by Shred ★ 1.6k
0
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0
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1.0k
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Answer: Answer: read ids along with transcript ids
updated 4.4 years ago by 103k • written 4.4 years ago by ★ 1.6k
0
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0
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629
views
Assemble 3'mRNAseq with standard RNAseq
stringtie RNAseq assembly 3mRNAseq
4.5 years ago by Shred ★ 1.6k
1
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0
replies
1.5k
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Answer: Answer: How to grep every row for the every value of a column?
4.6 years ago by Shred ★ 1.6k
1
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2
replies
1.5k
views
Comment: Comment: How to grep every row for the every value of a column?
4.6 years ago by Shred ★ 1.6k
1
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0
replies
975
views
Comment: C: module vs miniconda in HPC
4.7 years ago by Shred ★ 1.6k
1
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1
reply
2.0k
views
Answer: A: How to install R in WinSCP server
4.7 years ago by Shred ★ 1.6k
3
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1
reply
2.0k
views
Comment: C: How to install R in WinSCP server
4.7 years ago by Shred ★ 1.6k
11
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11
replies
19k
views
8 follow
Faster way to get GC content and Coverage from .fasta
sequencing next-gen genome bash fasta
3.8 years ago by Shred ★ 1.6k
1
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0
replies
3.8k
views
Comment: C: Pseudogenes in the human genome annotation
5.0 years ago by Shred ★ 1.6k
261 results • Page 4 of 6
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