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0
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reply
723
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Comment:
Comment: DESeq2 model matrix not full rank, potentially confounding factors?
9 months ago by
sg197
▴ 40
0
votes
4
replies
723
views
DESeq2 model matrix not full rank, potentially confounding factors?
DESeq2
differential-expression
RNA-seq
updated 9 months ago by
Asaf
10k • written 9 months ago by
sg197
▴ 40
0
votes
0
replies
886
views
Comment:
Comment: Count number of unique alignments to each chromosome from sam file
2.5 years ago by
sg197
▴ 40
0
votes
2
replies
886
views
Count number of unique alignments to each chromosome from sam file
samtools
sort
unix
uniq
sam
2.5 years ago by
sg197
▴ 40
0
votes
3
replies
931
views
find co-ordinates of overlapping fasta sequences
bedtools
fasta
microRNAs
3.8 years ago by
sg197
▴ 40
0
votes
1
reply
931
views
Comment:
C: find co-ordinates of overlapping fasta sequences
3.8 years ago by
sg197
▴ 40
0
votes
0
replies
880
views
miRDeep2 sample read count different between mapper.pl and quantifier.pl
miRDeep2
RNA-Seq
microRNA
3.8 years ago by
sg197
▴ 40
2
votes
2
replies
2.4k
views
R AnnotationDbi returning NA for pseudogenes during gene id annotation
R
AnnotationDbi
pseudogene
DESeq2
ensembl
updated 4.2 years ago by
Fratam
▴ 50 • written 4.5 years ago by
sg197
▴ 40
0
votes
1
reply
1.8k
views
Comment:
C: Using StringTie output GTF with featureCounts to assign reads- low assigned perc
4.5 years ago by
sg197
▴ 40
1
vote
3
replies
1.8k
views
Using StringTie output GTF with featureCounts to assign reads- low assigned percentage
RNA-Seq
featurecounts
stringtie
updated 4.5 years ago by
Mark
★ 1.5k • written 4.5 years ago by
sg197
▴ 40
4
votes
4
replies
7.2k
views
Difference between read counts STAR vs featureCounts
STAR
featureCounts
multimapped
RNA-Seq
updated 4.6 years ago by
h.mon
35k • written 4.6 years ago by
sg197
▴ 40
0
votes
0
replies
7.2k
views
Comment:
C: Difference between read counts STAR vs featureCounts
4.6 years ago by
sg197
▴ 40
1
vote
1
reply
1.4k
views
Are single-end reads processed the same as paired-end reads regarding strandedness?
RNA-Seq
featureCounts
strandedness
single-end
updated 4.6 years ago by
ATpoint
82k • written 4.6 years ago by
sg197
▴ 40
1
vote
0
replies
11k
views
Comment:
C: How do I download mm10 major release genomic fasta and gtf file?
4.6 years ago by
sg197
▴ 40
9
votes
3
replies
11k
views
How do I download mm10 major release genomic fasta and gtf file?
assembly
gtf
fasta
ftp
genomic
updated 4.6 years ago by
27atcggcta27
▴ 180 • written 4.6 years ago by
sg197
▴ 40
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