Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.1k
views
Comment: Comment: Rstudio server in Snakemake
9 months ago by camerond ▴ 190
0
votes
0
replies
908
views
Comment: Comment: creating conda environment from snakemake rule
10 months ago by camerond ▴ 190
0
votes
1
reply
908
views
Comment: Comment: creating conda environment from snakemake rule
10 months ago by camerond ▴ 190
0
votes
0
replies
908
views
Comment: Comment: creating conda environment from snakemake rule
10 months ago by camerond ▴ 190
0
votes
1
reply
908
views
Comment: Comment: creating conda environment from snakemake rule
10 months ago by camerond ▴ 190
0
votes
0
replies
328
views
Get SNPs with MAF 0.05 for all genes - attempt with BiomaRt
BiomaRt SNPs MAF genes
17 months ago by camerond ▴ 190
0
votes
0
replies
1.5k
views
Comment: Comment: Problem with snakefile.
2.9 years ago by camerond ▴ 190
0
votes
0
replies
1.5k
views
Comment: Comment: Problem with snakefile.
2.9 years ago by camerond ▴ 190
1
vote
2
replies
1.5k
views
Answer: Answer: Problem with snakefile.
2.9 years ago by camerond ▴ 190
1
vote
0
replies
11k
views
Comment: C: cellranger count help
3.2 years ago by camerond ▴ 190
0
votes
0
replies
3.0k
views
Comment: C: Seurat - label cells in cluster plot by transcripts per cell
3.5 years ago by camerond ▴ 190
2
votes
2
replies
3.0k
views
Seurat - label cells in cluster plot by transcripts per cell
Seurat RNA-Seq single-cell cluster labelling
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 190
0
votes
0
replies
4.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
3.8 years ago by camerond ▴ 190
0
votes
0
replies
4.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
3.8 years ago by camerond ▴ 190
0
votes
1
reply
4.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
3.8 years ago by camerond ▴ 190
5
votes
10
replies
4.0k
views
Snakemake - moving, re-naming, unzipping and merging files for downstream analysis
snakemake merging fastq python
3.8 years ago by camerond ▴ 190
0
votes
1
reply
4.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
3.8 years ago by camerond ▴ 190
0
votes
1
reply
4.0k
views
Comment: C: Snakemake - moving, re-naming, unzipping and merging files for downstream analys
3.8 years ago by camerond ▴ 190
2
votes
4
replies
3.6k
views
Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 files
bed bedtools
updated 13 months ago by 43k • written 4.5 years ago by ▴ 190
0
votes
0
replies
1.5k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
4.2 years ago by camerond ▴ 190
0
votes
0
replies
1.5k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
4.2 years ago by camerond ▴ 190
6
votes
8
replies
1.5k
views
Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-seq sequencing run
single cell RNA-seq 10X sequencing
4.2 years ago by camerond ▴ 190
0
votes
1
reply
1.5k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
4.2 years ago by camerond ▴ 190
0
votes
1
reply
1.5k
views
Comment: C: Extracting high quality reads from partially failed 10X single cell RNA-, ATAC-s
4.2 years ago by camerond ▴ 190
0
votes
0
replies
4.1k
views
Comment: C: Snakemake: Force execution of rules in a specific order - ignoring wildcards
4.2 years ago by camerond ▴ 190
4
votes
2
replies
4.1k
views
Snakemake: Force execution of rules in a specific order - ignoring wildcards
snakemake python rule execution
updated 4.2 years ago by ★ 2.1k • written 4.2 years ago by ▴ 190
0
votes
0
replies
3.6k
views
Answer: A: Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 fil
4.5 years ago by camerond ▴ 190
0
votes
0
replies
3.6k
views
Comment: C: Using bedtools intersect on multiple bed files to retain peaks in 2 out of 3 fil
4.5 years ago by camerond ▴ 190
0
votes
0
replies
1.2k
views
One tool for get genome co-ordinates from rsIDs GWAS sumstats files, then liftOver from hg18 to hg19?
liftover GWAS sumstats linux SNP
4.8 years ago by camerond ▴ 190
0
votes
1
reply
2.2k
views
Comment: C: Appropriate use of wildcards for single instances in Snakemake
4.9 years ago by camerond ▴ 190
2
votes
3
replies
2.2k
views
Appropriate use of wildcards for single instances in Snakemake
Snakemake wildcards Garfield
updated 4.9 years ago by 22k • written 4.9 years ago by ▴ 190
1
vote
0
replies
941
views
Comment: C: Extract and retain only chromosome info in GWAS sumstats file
4.9 years ago by camerond ▴ 190
6
votes
3
replies
941
views
Extract and retain only chromosome info in GWAS sumstats file
bash GWAS sumstats awk sed munging
updated 4.9 years ago by ★ 1.3k • written 4.9 years ago by ▴ 190
4
votes
2
replies
2.8k
views
Snakemake logging error
snakemake log
4.9 years ago by camerond ▴ 190
3
votes
1
reply
2.8k
views
Answer: A: Snakemake logging error
4.9 years ago by camerond ▴ 190
0
votes
1
reply
1.9k
views
Comment: C: Issue running deeptools on cluster via snakemake
4.9 years ago by camerond ▴ 190
0
votes
0
replies
1.9k
views
Comment: C: Issue running deeptools on cluster via snakemake
4.9 years ago by camerond ▴ 190
5
votes
5
replies
1.9k
views
Issue running deeptools on cluster via snakemake
Deeptools Snakemake
updated 4.9 years ago by 5.7k • written 4.9 years ago by ▴ 190
0
votes
0
replies
4.3k
views
Comment: C: Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over usin
5.0 years ago by camerond ▴ 190
1
vote
2
replies
4.3k
views
Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over rtracklayer GRanges bigwig
updated 5.0 years ago by 3.9k • written 5.0 years ago by ▴ 190
21
votes
15
replies
9.0k
views
8 follow
Obtaining rsIDs using BiomaRt or linux
R Biomart rsID SNPs bed
updated 2.2 years ago by • 0 • written 5.8 years ago by ▴ 190
1
vote
0
replies
9.0k
views
Comment: C: Obtaining rsIDs using BiomaRt or linux
5.8 years ago by camerond ▴ 190
1
vote
0
replies
9.0k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
6.0 years ago by camerond ▴ 190
0
votes
1
reply
9.0k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
6.0 years ago by camerond ▴ 190
0
votes
1
reply
9.0k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
6.0 years ago by camerond ▴ 190
0
votes
2
replies
9.0k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
6.1 years ago by camerond ▴ 190
12
votes
22
replies
9.0k
views
Get rsID for a list of SNPs in an entire GWAS sumstats file
next-gen sequencing GWAS sumstats
updated 2.6 years ago by ▴ 40 • written 6.1 years ago by ▴ 190
0
votes
0
replies
9.0k
views
Comment: C: Get rsID for a list of SNPs in an entire GWAS sumstats file
6.1 years ago by camerond ▴ 190
1
vote
0
replies
24k
views
Comment: C: Extract ONLY chromosomes 1-22 from bam file - removing extraneous chr annotation
6.1 years ago by camerond ▴ 190
15
votes
6
replies
24k
views
Extract ONLY chromosomes 1-22 from bam file - removing extraneous chr annotations
genome next-gen sequencing bam file filtering
updated 6.1 years ago by 161k • written 6.1 years ago by ▴ 190
50 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6