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2
votes
3
replies
3.6k
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DESeq2 - Warning message
deseq2 RNA-Seq software-error R
updated 2.7 years ago by 45k • written 10.5 years ago by ▴ 690
1
vote
1
reply
4.3k
views
How to use ToppGene ??
gene-expression RNAseq toppgene
updated 2.7 years ago by 45k • written 10.6 years ago by ▴ 690
0
votes
0
replies
9.2k
views
Answer: Answer: Rna-Seq Time Course Data
updated 3.6 years ago by 45k • written 10.6 years ago by ▴ 690
0
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1
reply
4.7k
views
Answer: A: Why cufflinks does not report raw read count anymore? Which version of it do rep
10.6 years ago by madkitty ▴ 690
0
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0
replies
4.2k
views
Comment: Comment: Spotfire: Issue when creating heat maps
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
0
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0
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2.7k
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Comment: Comment: Annotating Sequence Data with Patient History (Known Diseases)
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
0
votes
0
replies
8.0k
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Comment: Comment: Having trouble creating a heatmap in SPOTFIRE (microarray data)
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
0
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0
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8.0k
views
Comment: Comment: Having trouble creating a heatmap in SPOTFIRE (microarray data)
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
3
votes
4
replies
8.0k
views
Having trouble creating a heatmap in SPOTFIRE (microarray data)
microarray spotfire heatmap
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
0
votes
0
replies
3.3k
views
Comment: Comment: Analyze miRNA microarrays
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
2
votes
2
replies
3.3k
views
Analyze miRNA microarrays
microarray miRNA-analysis
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
0
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0
replies
3.3k
views
Comment: Comment: Best software to identify differentially methylated regions in Chipseq data?
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 690
6
votes
5
replies
7.6k
views
BCFtools outputs error : [bcf_sync] incorrect number of fields (6 != 5)
bcftools samtools mpileup BAM
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 690
0
votes
0
replies
3.7k
views
How to cluster only genes with Cluster 3.0 ?
treeview cluster
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 690
1
vote
1
reply
30k
views
Comment: Comment: Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 690
0
votes
0
replies
19k
views
Comment: Comment: log2 fold change : how to cut out by two fold?
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 690
0
votes
1
reply
19k
views
Comment: Comment: log2 fold change : how to cut out by two fold?
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 690
8
votes
6
replies
19k
views
log2 fold change : how to cut out by two fold?
log2 RNA-Seq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 690
0
votes
0
replies
7.9k
views
Comment: C: Gene Ontology Tools Widely Used
11.2 years ago by madkitty ▴ 690
0
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0
replies
8.0k
views
Comment: C: How to create a SIF file to use in Cytoscape?
11.2 years ago by madkitty ▴ 690
0
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0
replies
8.0k
views
Comment: C: How to create a SIF file to use in Cytoscape?
11.2 years ago by madkitty ▴ 690
4
votes
4
replies
8.0k
views
How to create a SIF file to use in Cytoscape?
cytoscape interaction gene
updated 11.2 years ago by 166k • written 11.2 years ago by ▴ 690
1
vote
6
replies
9.4k
views
How to Generate GO annotation from list of genes
gene-ontology blast2go
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 690
3
votes
1
reply
7.8k
views
deseq2 how to define data.frame with multiple treatments and multiple replicates?
RNA-Seq heatmap deseq2
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
0
replies
13k
views
Comment: Comment: DESeq2 very high p-values and padj
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 690
0
votes
0
replies
13k
views
Comment: C: DESeq2 very high p-values and padj
11.2 years ago by madkitty ▴ 690
0
votes
0
replies
13k
views
Comment: C: DESeq2 very high p-values and padj
11.2 years ago by madkitty ▴ 690
0
votes
1
reply
4.3k
views
Comment: C: Need project Ideas in Molecular Phylogenetics
11.3 years ago by madkitty ▴ 690
4
votes
1
reply
4.3k
views
Answer: Answer: Need project Ideas in Molecular Phylogenetics
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 690
6
votes
1
reply
8.0k
views
Is there a good manual/tutorial for TreeView?
heatmap RNAseq treeview
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
1
reply
15k
views
Comment: Comment: DESeq2 doesn't compare the right ctrl vs treatment?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
1
reply
15k
views
Comment: Comment: DESeq2 doesn't compare the right ctrl vs treatment?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
1
reply
15k
views
Comment: Comment: DESeq2 doesn't compare the right ctrl vs treatment?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
9
votes
7
replies
15k
views
DESeq2 doesn't compare the right ctrl vs treatment?
DESeq2 RNA-Seq
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
0
replies
5.0k
views
Comment: C: Need help with heatmap.2
11.3 years ago by madkitty ▴ 690
0
votes
1
reply
5.0k
views
Comment: Comment: Need help with heatmap.2
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
0
replies
4.0k
views
Comment: C: How to scrape data from UCSC genome browser?
11.3 years ago by madkitty ▴ 690
7
votes
5
replies
30k
views
Error: could not find function "heatmap.2"
deseq2 RNA-Seq heatmap
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
2
votes
0
replies
30k
views
Answer: Answer: Error: could not find function "heatmap.2"
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
0
replies
5.8k
views
Comment: C: How can I use SNPeff with this genome?
11.3 years ago by madkitty ▴ 690
0
votes
1
reply
5.8k
views
Comment: Comment: How can I use SNPeff with this genome?
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
4
replies
5.8k
views
How can I use SNPeff with this genome?
snpeff SNP
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
0
votes
0
replies
1.7k
views
What's a good Variant effect predictor for draft genomes?
genome variant SNP non-synonymous predictor
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 690
2
votes
0
replies
7.6k
views
Answer: Answer: BCFtools outputs error : [bcf_sync] incorrect number of fields (6 != 5)
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 690
0
votes
0
replies
7.6k
views
Comment: Comment: BCFtools outputs error : [bcf_sync] incorrect number of fields (6 != 5)
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 690
5
votes
1
reply
9.0k
views
Calling heterozygous and homozygous SNPs with SAMtools or VCF ?
vcf heterozygous bam samtools SNP
updated 3.8 years ago by 45k • written 11.4 years ago by ▴ 690
0
votes
0
replies
4.3k
views
Comment: C: Should I get into bioinformatics
11.4 years ago by madkitty ▴ 690
0
votes
2
replies
3.0k
views
[Samtools] How many hours does it take to call SNPs and indels?
time samtools bam
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 690
1
vote
3
replies
14k
views
[samtools depth] Calculate percent of the genome covered
samtools bam genome coverage
updated 3.8 years ago by 45k • written 11.4 years ago by ▴ 690
0
votes
0
replies
4.6k
views
Comment: C: [samtools reheader] Can't change chromosome name
11.4 years ago by madkitty ▴ 690
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