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0
votes
1
reply
1.3k
views
Comment:
C: Consensus WGCNA: soft-threshold power selection
4.1 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.4k
views
Comment:
C: GSEA analaysis understaning
4.1 years ago by
piyushjo
▴ 700
1
vote
2
replies
4.4k
views
Comment:
C: How to understand the multi-sample processing of Seurat?
4.1 years ago by
piyushjo
▴ 700
1
vote
1
reply
5.5k
views
Answer:
C: scRNA-seq, Seurat: correlation analysis of two replicates
4.1 years ago by
piyushjo
▴ 700
2
votes
1
reply
1.4k
views
Answer:
C: GSEA analaysis understaning
4.1 years ago by
piyushjo
▴ 700
7
votes
3
replies
1.8k
views
Sequencing PHRED quality confusion
fastqc
illumina 1.5
illumina 1.9
updated 4.1 years ago by
Istvan Albert
100k • written 4.1 years ago by
piyushjo
▴ 700
0
votes
0
replies
3.4k
views
Comment:
C: HISAT2: an "IndexError: index out of range"
4.1 years ago by
piyushjo
▴ 700
0
votes
1
reply
3.4k
views
Comment:
C: HISAT2: an "IndexError: index out of range"
4.1 years ago by
piyushjo
▴ 700
0
votes
1
reply
3.4k
views
Comment:
C: HISAT2: an "IndexError: index out of range"
4.1 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.2k
views
Comment:
C: All sequenced reads in piared end sequencing don't have mate pairs?
4.2 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.2k
views
Comment:
C: All sequenced reads in piared end sequencing don't have mate pairs?
4.2 years ago by
piyushjo
▴ 700
1
vote
5
replies
1.2k
views
All sequenced reads in piared end sequencing don't have mate pairs?
HISAT2
paired end sequencing
updated 4.2 years ago by
h.mon
35k • written 4.2 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.2k
views
Comment:
C: All sequenced reads in piared end sequencing don't have mate pairs?
4.2 years ago by
piyushjo
▴ 700
1
vote
0
replies
2.5k
views
Comment:
C: Does StringTie need strand information if HISAT2 was run with strand-specific in
4.2 years ago by
piyushjo
▴ 700
1
vote
2
replies
2.5k
views
Does StringTie need strand information if HISAT2 was run with strand-specific information
HISAT2
STRINGTIE
updated 4.2 years ago by
humeira.tayyab
▴ 20 • written 4.8 years ago by
piyushjo
▴ 700
0
votes
0
replies
2.4k
views
Comment:
C: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
4.3 years ago by
piyushjo
▴ 700
4
votes
3
replies
2.4k
views
Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
scRNA-seq
dataset integration
updated 5 months ago by
e.r.zakiev
▴ 210 • written 4.3 years ago by
piyushjo
▴ 700
0
votes
0
replies
6.5k
views
Comment:
C: Single cell clutering after regressing out cell cycle effect using seurat
4.6 years ago by
piyushjo
▴ 700
1
vote
0
replies
4.8k
views
Comment:
C: HISAT2 index building
4.6 years ago by
piyushjo
▴ 700
2
votes
1
reply
1.3k
views
Comment:
C: lncRNA and circular RNA identification softwares
4.6 years ago by
piyushjo
▴ 700
4
votes
6
replies
6.5k
views
Single cell clutering after regressing out cell cycle effect using seurat
seurat
scRNA-seq
clustering
updated 6 months ago by
Haci
▴ 680 • written 4.7 years ago by
piyushjo
▴ 700
1
vote
0
replies
4.4k
views
Comment:
C: How to filter out the non-coding genes?
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
5.1k
views
Comment:
C: scRNA-seq analysis of two data-sets
4.7 years ago by
piyushjo
▴ 700
0
votes
1
reply
5.1k
views
Comment:
C: scRNA-seq analysis of two data-sets
4.7 years ago by
piyushjo
▴ 700
5
votes
7
replies
5.1k
views
scRNA-seq analysis of two data-sets
seurat
scRNA-seq
updated 4.7 years ago by
jared.andrews07
★ 16k • written 4.7 years ago by
piyushjo
▴ 700
0
votes
1
reply
6.5k
views
Comment:
C: Single cell clutering after regressing out cell cycle effect using seurat
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.1k
views
Comment:
C: Extracting important gene with similar expression level from multiple samples
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
2.9k
views
Comment:
C: GenBank accesion number to gene id
4.7 years ago by
piyushjo
▴ 700
0
votes
1
reply
1.1k
views
Answer:
A: Extracting important gene with similar expression level from multiple samples
4.7 years ago by
piyushjo
▴ 700
0
votes
1
reply
2.9k
views
Comment:
C: GenBank accesion number to gene id
4.7 years ago by
piyushjo
▴ 700
0
votes
1
reply
2.9k
views
Answer:
A: GenBank accesion number to gene id
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
6.0k
views
Answer:
A: To generate an scRNA counts file using barcodes.tsv, genes.tsv and matrix.mtx fi
4.7 years ago by
piyushjo
▴ 700
2
votes
0
replies
1.1k
views
Answer:
A: Upstream regulators of a gene/protein
4.7 years ago by
piyushjo
▴ 700
3
votes
1
reply
3.3k
views
Answer:
A: Get a bunch of ENTREZID into gene symbols
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.3k
views
Comment:
C: Find similar values in two gene lists
4.7 years ago by
piyushjo
▴ 700
0
votes
1
reply
1.3k
views
Answer:
A: Find similar values in two gene lists
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.3k
views
Comment:
C: Find similar values in two gene lists
4.7 years ago by
piyushjo
▴ 700
0
votes
0
replies
3.5k
views
Comment:
C: Best way to address different batches of RNA-seq
4.7 years ago by
piyushjo
▴ 700
1
vote
0
replies
4.1k
views
Comment:
C: what is inverse normalized RNA-seq expression and how to do that?
5.2 years ago by
piyushjo
▴ 700
3
votes
3
replies
4.1k
views
what is inverse normalized RNA-seq expression and how to do that?
normalization
RNA-Seq
5.2 years ago by
piyushjo
▴ 700
0
votes
0
replies
1.4k
views
Answer:
A: Get mRNA sequence from UCSC genome browser using coordinates
5.2 years ago by
piyushjo
▴ 700
1
vote
0
replies
1.0k
views
Answer:
A: Differential Expression of lncRNAs in Brain --- Can a database aid my search?
5.3 years ago by
piyushjo
▴ 700
0
votes
1
reply
2.4k
views
Comment:
C: Comparing stranded reads to unstranded reads
5.3 years ago by
piyushjo
▴ 700
0
votes
1
reply
2.4k
views
Comment:
C: Comparing stranded reads to unstranded reads
5.3 years ago by
piyushjo
▴ 700
2
votes
8
replies
2.4k
views
Comparing stranded reads to unstranded reads
RNA-Seq
DE gene
strand information
updated 5.3 years ago by
johnsonnathant
▴ 120 • written 5.3 years ago by
piyushjo
▴ 700
0
votes
1
reply
2.4k
views
Comment:
C: Comparing stranded reads to unstranded reads
5.3 years ago by
piyushjo
▴ 700
0
votes
0
replies
3.0k
views
Comment:
C: Tips for network prediction: WGCNA vs ARACNE (or MINET)
5.3 years ago by
piyushjo
▴ 700
4
votes
2
replies
3.0k
views
Tips for network prediction: WGCNA vs ARACNE (or MINET)
network inference
aracne
wgcna
updated 5.3 years ago by
fuyingxue
▴ 20 • written 5.6 years ago by
piyushjo
▴ 700
0
votes
1
reply
2.3k
views
Comment:
C: RNA-strandness of single cell library prep methods
5.4 years ago by
piyushjo
▴ 700
0
votes
9
replies
2.3k
views
RNA-strandness of single cell library prep methods
scRNA-seq
smarter-seq
nextera
fluidigm
updated 2.5 years ago by
Ram
43k • written 5.4 years ago by
piyushjo
▴ 700
147 results • Page
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