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comments
2
votes
1
reply
298
views
Answer:
Answer: How To Choose Metagenomics Function annotation : Reads-based v.s. Contigs-based
4 weeks ago by
young_bioinformatician
▴ 190
0
votes
0
replies
139
views
How to handle KEGG orthologous IDs involved multiple pathways
KEGG
annotation
metagenome
functional
gene
3 months ago by
young_bioinformatician
▴ 190
0
votes
1
reply
409
views
Comment:
Comment: Further Reducing Gene Ontology list
6 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
538
views
Comment:
Comment: How to combine eggnog and interproscan
6 months ago by
young_bioinformatician
▴ 190
0
votes
2
replies
538
views
How to combine eggnog and interproscan
pfam
eggnog
blast
interproscan
annotation
6 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
3.1k
views
Comment:
Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
6 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
550
views
Comment:
Comment: long view SNPs in vcf file
6 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
550
views
Comment:
Comment: long view SNPs in vcf file
6 months ago by
young_bioinformatician
▴ 190
3
votes
4
replies
550
views
long view SNPs in vcf file
Calling
Variant
freebayes
SNP
vcftools
bcftools
6 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
420
views
Comment:
Comment: Change ploidy level in vcf file
updated 7 months ago by
4galaxy77
2.7k • written 7 months ago by
young_bioinformatician
▴ 190
0
votes
2
replies
420
views
Change ploidy level in vcf file
vcf
freebayes
SNP
vcftools
bcftools
updated 7 months ago by
4galaxy77
2.7k • written 7 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
187
views
How to manage GO terms for metagenomics
GO
metagenome
annotation
ontology
Gene
functions
7 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
990
views
Comment:
Comment: How to create a basic GUI for rna seq pipeline
7 months ago by
young_bioinformatician
▴ 190
0
votes
1
reply
854
views
Comment:
Comment: Fasta headers column spilt or selection
8 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
359
views
Comment:
Comment: variant analysis using Freebayes
8 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
338
views
Comment:
Comment: Error loading a bam + bai files in IGV
8 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
518
views
Comment:
Comment: When to use Genome assembly and when to use short read alignment for consensus g
8 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
922
views
Comment:
Comment: PLINK - individual variance with the SNPs weights
8 months ago by
young_bioinformatician
▴ 190
0
votes
1
reply
922
views
Comment:
Comment: PLINK - individual variance with the SNPs weights
8 months ago by
young_bioinformatician
▴ 190
0
votes
1
reply
922
views
Comment:
Comment: PLINK - individual variance with the SNPs weights
8 months ago by
young_bioinformatician
▴ 190
3
votes
6
replies
922
views
PLINK - individual variance with the SNPs weights
plink
snp
variant
population
pca
8 months ago by
young_bioinformatician
▴ 190
0
votes
1
reply
510
views
Comment:
Comment: Normalization after Trimmomatic ?
11 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
212
views
How to (or not to) interpret the annotation abundance result from metagenome
gene
abundance
GO
annotation
metagenome
11 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
946
views
Answer:
Answer: MG RAST for Eukaryota
12 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
426
views
Comment:
Comment: Considering two and more variation in polyploidy
12 months ago by
young_bioinformatician
▴ 190
0
votes
1
reply
426
views
Comment:
Comment: Considering two and more variation in polyploidy
12 months ago by
young_bioinformatician
▴ 190
0
votes
4
replies
426
views
Considering two and more variation in polyploidy
Population
SNP
Variant
genomic
Calling
12 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
441
views
Comment:
Comment: PCA biplot for SNPs data
15 months ago by
young_bioinformatician
▴ 190
0
votes
2
replies
441
views
PCA biplot for SNPs data
SNP
Calling
PCA
Variant
15 months ago by
young_bioinformatician
▴ 190
0
votes
0
replies
698
views
Comment:
C: IDBA-UD Output Question
2.8 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
848
views
Comment:
C: Missing pseudogenes in annotation report
2.9 years ago by
young_bioinformatician
▴ 190
1
vote
1
reply
848
views
Comment:
C: Missing pseudogenes in annotation report
2.9 years ago by
young_bioinformatician
▴ 190
1
vote
1
reply
848
views
Comment:
C: Missing pseudogenes in annotation report
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
1.4k
views
Comment:
A: Comparing SPAdes assemblies to each other?
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
1
reply
956
views
Comment:
C: Why one genome assembly is more fragmented than others?
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
1.5k
views
Answer:
A: Display bootstraps on tree RAxML-NG
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
700
views
Comment:
C: Find transcripts of one species in RNA-assembly
2.9 years ago by
young_bioinformatician
▴ 190
2
votes
1
reply
749
views
Answer:
A: reorder contigs into scaffold?
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
1
reply
1.9k
views
Comment:
C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
2.9 years ago by
young_bioinformatician
▴ 190
1
vote
2
replies
700
views
Comment:
C: Find transcripts of one species in RNA-assembly
2.9 years ago by
young_bioinformatician
▴ 190
2
votes
0
replies
2.0k
views
Answer:
A: RAxML generate best tree from 500 bootstrap trees
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
1
reply
602
views
Comment:
C: Constructing reference-based draft genome
2.9 years ago by
young_bioinformatician
▴ 190
1
vote
3
replies
602
views
Constructing reference-based draft genome
Assembly
genome
next-gen
2.9 years ago by
young_bioinformatician
▴ 190
0
votes
1
reply
511
views
Comment:
C: Local BLAST search
3.0 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
892
views
Answer:
A: script bash for counting
3.0 years ago by
young_bioinformatician
▴ 190
1
vote
0
replies
676
views
Answer:
A: KEGG mapping for larger sample size (100) ?
3.0 years ago by
young_bioinformatician
▴ 190
5
votes
1
reply
5.2k
views
Answer:
A: How to filter BLAST results by query coverage? How to analyze large BLAST output
3.0 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
2.2k
views
Comment:
A: Direction in GSEA in clusterProfiler
3.0 years ago by
young_bioinformatician
▴ 190
0
votes
0
replies
539
views
Answer:
A: Make a reference transcriptome for nonmodel organism
3.0 years ago by
young_bioinformatician
▴ 190
1
vote
1
reply
2.0k
views
Comment:
C: Gene alignment with IGV
3.0 years ago by
young_bioinformatician
▴ 190
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