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0
votes
1
reply
300
views
Comment:
Comment: Further Reducing Gene Ontology list
11 weeks ago by
young_bioinformatician
▴ 170
0
votes
0
replies
313
views
Comment:
Comment: How to combine eggnog and interproscan
11 weeks ago by
young_bioinformatician
▴ 170
0
votes
2
replies
313
views
How to combine eggnog and interproscan
pfam
eggnog
blast
interproscan
annotation
11 weeks ago by
young_bioinformatician
▴ 170
0
votes
0
replies
2.9k
views
Comment:
Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
12 weeks ago by
young_bioinformatician
▴ 170
0
votes
0
replies
431
views
Comment:
Comment: long view SNPs in vcf file
3 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
431
views
Comment:
Comment: long view SNPs in vcf file
3 months ago by
young_bioinformatician
▴ 170
2
votes
4
replies
431
views
long view SNPs in vcf file
Calling
Variant
freebayes
SNP
vcftools
bcftools
3 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
337
views
Comment:
Comment: Change ploidy level in vcf file
updated 3 months ago by
4galaxy77
2.6k • written 3 months ago by
young_bioinformatician
▴ 170
0
votes
2
replies
337
views
Change ploidy level in vcf file
vcf
freebayes
SNP
vcftools
bcftools
updated 3 months ago by
4galaxy77
2.6k • written 3 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
131
views
How to manage GO terms for metagenomics
GO
metagenome
annotation
ontology
Gene
functions
3 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
753
views
Comment:
Comment: How to create a basic GUI for rna seq pipeline
3 months ago by
young_bioinformatician
▴ 170
0
votes
1
reply
679
views
Comment:
Comment: Fasta headers column spilt or selection
4 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
281
views
Comment:
Comment: variant analysis using Freebayes
4 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
202
views
Comment:
Comment: Error loading a bam + bai files in IGV
4 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
436
views
Comment:
Comment: When to use Genome assembly and when to use short read alignment for consensus g
4 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
635
views
Comment:
Comment: PLINK - individual variance with the SNPs weights
4 months ago by
young_bioinformatician
▴ 170
0
votes
1
reply
635
views
Comment:
Comment: PLINK - individual variance with the SNPs weights
4 months ago by
young_bioinformatician
▴ 170
0
votes
1
reply
635
views
Comment:
Comment: PLINK - individual variance with the SNPs weights
4 months ago by
young_bioinformatician
▴ 170
3
votes
6
replies
635
views
PLINK - individual variance with the SNPs weights
plink
snp
variant
population
pca
4 months ago by
young_bioinformatician
▴ 170
0
votes
1
reply
405
views
Comment:
Comment: Normalization after Trimmomatic ?
7 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
175
views
How to (or not to) interpret the annotation abundance result from metagenome
gene
abundance
GO
annotation
metagenome
7 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
896
views
Answer:
Answer: MG RAST for Eukaryota
8 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
358
views
Comment:
Comment: Considering two and more variation in polyploidy
9 months ago by
young_bioinformatician
▴ 170
0
votes
1
reply
358
views
Comment:
Comment: Considering two and more variation in polyploidy
9 months ago by
young_bioinformatician
▴ 170
0
votes
4
replies
358
views
Considering two and more variation in polyploidy
Population
SNP
Variant
genomic
Calling
9 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
371
views
Comment:
Comment: PCA biplot for SNPs data
11 months ago by
young_bioinformatician
▴ 170
0
votes
2
replies
371
views
PCA biplot for SNPs data
SNP
Calling
PCA
Variant
11 months ago by
young_bioinformatician
▴ 170
0
votes
0
replies
661
views
Comment:
C: IDBA-UD Output Question
2.5 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
791
views
Comment:
C: Missing pseudogenes in annotation report
2.6 years ago by
young_bioinformatician
▴ 170
1
vote
1
reply
791
views
Comment:
C: Missing pseudogenes in annotation report
2.6 years ago by
young_bioinformatician
▴ 170
1
vote
1
reply
791
views
Comment:
C: Missing pseudogenes in annotation report
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
1.3k
views
Comment:
A: Comparing SPAdes assemblies to each other?
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
1
reply
816
views
Comment:
C: Why one genome assembly is more fragmented than others?
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
1.4k
views
Answer:
A: Display bootstraps on tree RAxML-NG
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
654
views
Comment:
C: Find transcripts of one species in RNA-assembly
2.6 years ago by
young_bioinformatician
▴ 170
2
votes
1
reply
657
views
Answer:
A: reorder contigs into scaffold?
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
1
reply
1.8k
views
Comment:
C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
2.6 years ago by
young_bioinformatician
▴ 170
1
vote
2
replies
654
views
Comment:
C: Find transcripts of one species in RNA-assembly
2.6 years ago by
young_bioinformatician
▴ 170
2
votes
0
replies
1.8k
views
Answer:
A: RAxML generate best tree from 500 bootstrap trees
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
1
reply
573
views
Comment:
C: Constructing reference-based draft genome
2.6 years ago by
young_bioinformatician
▴ 170
1
vote
3
replies
573
views
Constructing reference-based draft genome
Assembly
genome
next-gen
2.6 years ago by
young_bioinformatician
▴ 170
0
votes
1
reply
464
views
Comment:
C: Local BLAST search
2.7 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
752
views
Answer:
A: script bash for counting
2.7 years ago by
young_bioinformatician
▴ 170
1
vote
0
replies
639
views
Answer:
A: KEGG mapping for larger sample size (100) ?
2.7 years ago by
young_bioinformatician
▴ 170
5
votes
1
reply
4.6k
views
Answer:
A: How to filter BLAST results by query coverage? How to analyze large BLAST output
2.7 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
2.0k
views
Comment:
A: Direction in GSEA in clusterProfiler
2.7 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
509
views
Answer:
A: Make a reference transcriptome for nonmodel organism
2.7 years ago by
young_bioinformatician
▴ 170
1
vote
1
reply
1.7k
views
Comment:
C: Gene alignment with IGV
2.7 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
2.3k
views
Comment:
C: Too many unmapped reads - STAR alignment
2.7 years ago by
young_bioinformatician
▴ 170
0
votes
0
replies
658
views
Comment:
C: metagenomic bacterial identify
2.7 years ago by
young_bioinformatician
▴ 170
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