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Comment: Comment: DESeq2 on metagenome KO counts
20 days ago by young_bioinformatician ▴ 250
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Comment: Comment: DESeq2 on metagenome KO counts
20 days ago by young_bioinformatician ▴ 250
7
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11
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1.6k
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DESeq2 on metagenome KO counts
abundance KEGG KO deseq metagenome gene
updated 12 days ago by ▴ 190 • written 4 weeks ago by ▴ 250
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1.6k
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Comment: Comment: DESeq2 on metagenome KO counts
4 weeks ago by young_bioinformatician ▴ 250
0
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1
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567
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Comparison of different gene catalog abundance
assembly catalog metagenome illumina gene
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 250
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1
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1.1k
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Answer: Answer: What is the interpretation of sequence enrichment in whole genome sequencing?
10 months ago by young_bioinformatician ▴ 250
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2.3k
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Answer: Answer: Fragmented BUSCOs of genome assemblies - How to improve scores?
14 months ago by young_bioinformatician ▴ 250
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1
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1.3k
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Comment: Comment: Reformatting Merged and Unmerged Paired-End Files
20 months ago by young_bioinformatician ▴ 250
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3
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1.3k
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Reformatting Merged and Unmerged Paired-End Files
illumina fastp fastqc bbmap
updated 20 months ago by 154k • written 20 months ago by ▴ 250
5
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5
replies
2.5k
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long view SNPs in vcf file
bcftools Variant-Calling SNP freebayes vcftools
updated 20 months ago by ▴ 10 • written 3.0 years ago by ▴ 250
1
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0
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2.4k
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Comment: Comment: Guided genome assembly
21 months ago by young_bioinformatician ▴ 250
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1
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1.7k
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Comment: Comment: eggNOG versus Diamond blastp
21 months ago by young_bioinformatician ▴ 250
0
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0
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808
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Answer: Answer: Multimapped and unique mapped for BAM file of RRBS data
21 months ago by young_bioinformatician ▴ 250
2
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3
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1.7k
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eggNOG versus Diamond blastp
diamond eggNOG protein functional
updated 21 months ago by ★ 2.9k • written 21 months ago by ▴ 250
1
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2
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1.4k
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How to manage GO terms for metagenomics
metagenome gene-ontology GO
updated 21 months ago by ▴ 470 • written 3.1 years ago by ▴ 250
2
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1
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833
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Answer: Answer: move fasta and fastq files with the same name folder
21 months ago by young_bioinformatician ▴ 250
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0
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2.0k
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Answer: Answer: How to produce "publication quality figures" for MAGs from environmental samples
22 months ago by young_bioinformatician ▴ 250
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0
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
6
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23
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5.0k
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How to speed Salmon index up
metagenome genome salmon
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Answer: Answer: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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2
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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1
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
0
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0
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5.0k
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Comment: Comment: How to speed Salmon index up
22 months ago by young_bioinformatician ▴ 250
1
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2
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1.2k
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Answer: Answer: Transcript Based Annotation of Variants Using Annovar
22 months ago by young_bioinformatician ▴ 250
2
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1
reply
1.8k
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Answer: Answer: How To Choose Metagenomics Function annotation : Reads-based v.s. Contigs-based
2.5 years ago by young_bioinformatician ▴ 250
0
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0
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803
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How to handle KEGG orthologous IDs involved multiple pathways
KEGG annotation metagenome functional gene
2.7 years ago by young_bioinformatician ▴ 250
0
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1
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1.6k
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Comment: Comment: Further Reducing Gene Ontology list
3.0 years ago by young_bioinformatician ▴ 250
0
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0
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2.6k
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Comment: Comment: How to combine eggnog and interproscan
3.0 years ago by young_bioinformatician ▴ 250
1
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2
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2.6k
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How to combine eggnog and interproscan
pfam eggnog blast interproscan annotation
3.0 years ago by young_bioinformatician ▴ 250
0
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0
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4.6k
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Comment: Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
3.0 years ago by young_bioinformatician ▴ 250
0
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0
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2.5k
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Comment: Comment: long view SNPs in vcf file
3.0 years ago by young_bioinformatician ▴ 250
0
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0
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2.5k
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Comment: Comment: long view SNPs in vcf file
3.0 years ago by young_bioinformatician ▴ 250
0
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0
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1.1k
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Comment: Comment: Change ploidy level in vcf file
updated 3.1 years ago by 2.9k • written 3.1 years ago by ▴ 250
0
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2
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1.1k
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Change ploidy level in vcf file
vcf freebayes SNP vcftools bcftools
updated 3.1 years ago by 2.9k • written 3.1 years ago by ▴ 250
0
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0
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4.1k
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Comment: Comment: How to create a basic GUI for rna seq pipeline
3.1 years ago by young_bioinformatician ▴ 250
0
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1
reply
2.8k
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Comment: Comment: Fasta headers column spilt or selection
3.1 years ago by young_bioinformatician ▴ 250
0
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0
replies
1.2k
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Comment: Comment: variant analysis using Freebayes
3.1 years ago by young_bioinformatician ▴ 250
0
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0
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1.5k
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Comment: Comment: Error loading a bam + bai files in IGV
3.1 years ago by young_bioinformatician ▴ 250
0
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0
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1.9k
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Comment: Comment: When to use Genome assembly and when to use short read alignment for consensus g
3.1 years ago by young_bioinformatician ▴ 250
0
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0
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3.5k
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Comment: Comment: PLINK - individual variance with the SNPs weights
3.2 years ago by young_bioinformatician ▴ 250
0
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1
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3.5k
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Comment: Comment: PLINK - individual variance with the SNPs weights
3.2 years ago by young_bioinformatician ▴ 250
0
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1
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3.5k
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Comment: Comment: PLINK - individual variance with the SNPs weights
3.2 years ago by young_bioinformatician ▴ 250
3
votes
6
replies
3.5k
views
PLINK - individual variance with the SNPs weights
plink snp variant population pca
3.2 years ago by young_bioinformatician ▴ 250
0
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1
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1.4k
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Comment: Comment: Normalization after Trimmomatic ?
3.4 years ago by young_bioinformatician ▴ 250
0
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0
replies
1.5k
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Answer: Answer: MG RAST for Eukaryota
3.5 years ago by young_bioinformatician ▴ 250
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