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Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
2.8 years ago by mohammedtoufiq91 ▴ 260
2
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4
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8.9k
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Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or missing values in 'x')
missMDA R PCAtools PCA
updated 16 months ago by 44k • written 2.8 years ago by ▴ 260
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46k
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Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
2.8 years ago by mohammedtoufiq91 ▴ 260
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0
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833
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Comment: Comment: Combining Microarray and RNA-Seq datasets visualization and comparison
updated 2.9 years ago by 85k • written 2.9 years ago by ▴ 260
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1
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833
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Combining Microarray and RNA-Seq datasets visualization and comparison
ComBat microarray sva RNAseq expression gene
updated 2.9 years ago by 85k • written 2.9 years ago by ▴ 260
2
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2
replies
3.2k
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Exporting normalized counts data from DeSeq2
DESeq2 normalization expression RNA-seq
updated 2.1 years ago by 44k • written 3.1 years ago by ▴ 260
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3.2k
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Comment: Comment: Exporting normalized counts data from DeSeq2
3.1 years ago by mohammedtoufiq91 ▴ 260
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0
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1.4k
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Comment: Comment: Combining RNA-Seq read counts from 2 lanes of the same sample (.txt file)
3.1 years ago by mohammedtoufiq91 ▴ 260
1
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2
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1.4k
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Combining RNA-Seq read counts from 2 lanes of the same sample (.txt file)
expression featurecounts counts rna-seq gene
3.1 years ago by mohammedtoufiq91 ▴ 260
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0
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5.0k
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Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
3.1 years ago by mohammedtoufiq91 ▴ 260
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0
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1.7k
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Comment: Comment: Calculate fold change in edgeR with one sample per condition
3.1 years ago by mohammedtoufiq91 ▴ 260
4
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5
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1.7k
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Calculate fold change in edgeR with one sample per condition
R edgeR expression rna-seq differential
3.1 years ago by mohammedtoufiq91 ▴ 260
8
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6
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5.0k
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How to convert log2 scale RNA-Seq expression data to linear scale data
expression edgeR R rna-seq fold-change
updated 3.2 years ago by 13k • written 3.2 years ago by ▴ 260
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2
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5.0k
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Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
3.2 years ago by mohammedtoufiq91 ▴ 260
9
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7
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3.2k
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Averaging duplicates of a gene in RNA-Seq dataset
expression differential average R rna-seq
updated 3.3 years ago by ▴ 60 • written 3.3 years ago by ▴ 260
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0
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3.2k
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Comment: Comment: Averaging duplicates of a gene in RNA-Seq dataset
3.3 years ago by mohammedtoufiq91 ▴ 260
0
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1
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3.2k
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Comment: Comment: Averaging duplicates of a gene in RNA-Seq dataset
3.3 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.2k
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Comment: Comment: How to create gene level data from a probe level data?
3.3 years ago by mohammedtoufiq91 ▴ 260
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0
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1.2k
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Comment: Comment: How to create gene level data from a probe level data?
3.3 years ago by mohammedtoufiq91 ▴ 260
2
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4
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1.2k
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How to create gene level data from a probe level data?
R sum mean gene microarray
3.3 years ago by mohammedtoufiq91 ▴ 260
0
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0
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801
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Comment: Comment: How to calculate the difference between the RNA-Seq individual samples?
3.3 years ago by mohammedtoufiq91 ▴ 260
1
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2
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801
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How to calculate the difference between the RNA-Seq individual samples?
comparison expression edgeR replicates R
3.3 years ago by mohammedtoufiq91 ▴ 260
0
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0
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42k
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Comment: Comment: LogFC and LogCPM
3.3 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.7k
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Comment: Comment: Calculate fold change in edgeR with one sample per condition
3.4 years ago by mohammedtoufiq91 ▴ 260
1
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1
reply
552
views
Flooring (adjusting) values in Gene Expression Microarray data analysis?
gene-expression microarray R
updated 3.4 years ago by 85k • written 3.4 years ago by ▴ 260
0
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1
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3.2k
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How to increase the size of the top annotation bars in Complexheatmap
plot annotation ComplexHeatmap heatmap
3.5 years ago by mohammedtoufiq91 ▴ 260
0
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0
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3.2k
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Answer: Answer: How to increase the size of the top annotation bars in Complexheatmap
3.5 years ago by mohammedtoufiq91 ▴ 260
0
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1
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1.4k
views
Comment: Comment: How to sort multi columns on long dataframe in R
3.5 years ago by mohammedtoufiq91 ▴ 260
0
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1
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1.4k
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Comment: Comment: How to sort multi columns on long dataframe in R
3.5 years ago by mohammedtoufiq91 ▴ 260
1
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5
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1.4k
views
How to sort multi columns on long dataframe in R
data.frame Order R dplyr plyr
updated 3.5 years ago by ▴ 210 • written 3.5 years ago by ▴ 260
4
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4
replies
2.6k
views
Customize fold change legend values in ComplexHeatmap
ComplexHeatmap circlize colorRamp2 R matrix
updated 3.8 years ago by 20 • written 4.0 years ago by ▴ 260
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0
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2.6k
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Comment: C: Customize fold change legend values in ComplexHeatmap
4.0 years ago by mohammedtoufiq91 ▴ 260
0
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1
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2.6k
views
Comment: C: Customize fold change legend values in ComplexHeatmap
4.0 years ago by mohammedtoufiq91 ▴ 260
0
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0
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5.4k
views
Comment: C: How to visualize Boxplot with using fold change values in ggplot2 in R
4.2 years ago by mohammedtoufiq91 ▴ 260
0
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1
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5.4k
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Comment: C: How to visualize Boxplot with using fold change values in ggplot2 in R
4.2 years ago by mohammedtoufiq91 ▴ 260
6
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5
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5.4k
views
How to visualize Boxplot with using fold change values in ggplot2 in R
Boxplot ggplot2 R fold change
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 260
0
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0
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3.1k
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Comment: C: Batch effect identification using PCA
4.3 years ago by mohammedtoufiq91 ▴ 260
1
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5
replies
3.1k
views
Batch effect identification using PCA
PCA qRT-PCR R targeted-assay Batch-Effect
updated 6 months ago by 44k • written 4.3 years ago by ▴ 260
0
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1
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3.1k
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Comment: C: Batch effect identification using PCA
4.3 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
1.7k
views
Comment: C: PCA plot on genes and color by batch and plate information
4.4 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.7k
views
Comment: C: PCA plot on genes and color by batch and plate information
4.4 years ago by mohammedtoufiq91 ▴ 260
1
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5
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1.7k
views
PCA plot on genes and color by batch and plate information
pca factoextra ggfortify ggplot2 reshape2
4.4 years ago by mohammedtoufiq91 ▴ 260
0
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0
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2.1k
views
Comment: C: Unable to locate libraries in latest version of R 4.0.0
4.4 years ago by mohammedtoufiq91 ▴ 260
3
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5
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2.1k
views
Unable to locate libraries in latest version of R 4.0.0
R library missing r studio installation
updated 4.4 years ago by 20 • written 4.4 years ago by ▴ 260
0
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0
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2.1k
views
Comment: C: Unable to locate libraries in latest version of R 4.0.0
4.4 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
2.6k
views
Comment: C: Error while using ComplexHeatmap
4.4 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
2.6k
views
Comment: C: Error while using ComplexHeatmap
4.4 years ago by mohammedtoufiq91 ▴ 260
2
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5
replies
2.6k
views
Error while using ComplexHeatmap
R data.frame ComplexHeatmap heatmap clustering
4.4 years ago by mohammedtoufiq91 ▴ 260
0
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1
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1.7k
views
How to combine different data types and perform PCA in R
PCA Microarray RNA-Seq data frame R
4.4 years ago by mohammedtoufiq91 ▴ 260
0
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0
replies
1.2k
views
Comment: C: Error while plotting in ggplot2
4.5 years ago by mohammedtoufiq91 ▴ 260
191 results • Page 2 of 4
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