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0
replies
294
views
Comment:
Comment: Help related to HTSEq usage specific for downstream DEXSeq analysis
9 weeks ago by
Barry Digby
★ 1.3k
1
vote
0
replies
348
views
Answer:
Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
10 weeks ago by
Barry Digby
★ 1.3k
0
votes
0
replies
453
views
Comment:
Comment: Opinion on miRNA pipeline
3 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
453
views
Comment:
Comment: Opinion on miRNA pipeline
3 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
310
views
Comment:
Comment: error uploading gct file to gsea
4 months ago by
Barry Digby
★ 1.3k
1
vote
0
replies
312
views
Answer:
Answer: How to implement neoantigen sequences using WES data?
5 months ago by
Barry Digby
★ 1.3k
3
votes
1
reply
543
views
Answer:
Answer: Unable to save plots in R using jpeg() or png()
5 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
508
views
Comment:
Comment: I cannot obtain summary alignment with Bowtie2
5 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
508
views
Answer:
Answer: I cannot obtain summary alignment with Bowtie2
5 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
595
views
Comment:
Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 5 months ago by
Ram
43k • written 5 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
768
views
Answer:
Answer: identify DEGs across all conditions and per specific conditions
5 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
640
views
Comment:
Comment: obtaining circular RNAs' sequences from circBase
5 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
640
views
Answer:
Answer: obtaining circular RNAs' sequences from circBase
5 months ago by
Barry Digby
★ 1.3k
3
votes
0
replies
583
views
Answer:
Answer: Identifying common DEGs among multiple datasets
6 months ago by
Barry Digby
★ 1.3k
2
votes
0
replies
2.1k
views
Answer:
Answer: Running python script in slurm using conda environment
6 months ago by
Barry Digby
★ 1.3k
3
votes
0
replies
962
views
Answer:
Answer: How to remove the gene label in heatmap RNA-seq
6 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
911
views
Comment:
Comment: No differentially expressed genes after multiple testing correction in mice
10 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
570
views
Comment:
Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
11 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.3k
views
Answer:
Answer: How to run prepDE.py3?
11 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.5k
views
Answer:
Answer: Unusual FastQC sequence distribution from small RNA seq
14 months ago by
Barry Digby
★ 1.3k
2
votes
1
reply
741
views
Answer:
Answer: How do I extract gene names from different portions of my heatmap?
18 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
642
views
Comment:
Comment: circular RNA analysis workflow
19 months ago by
Barry Digby
★ 1.3k
0
votes
5
replies
2.2k
views
Missing gene symbols in bustools output
bustools
scanpy
kallisto
single-cell
scRNA
updated 20 months ago by
s.koturan
• 0 • written 4.2 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
2.9k
views
Comment:
Comment: error while testing nextflow with --genome GRCh38
20 months ago by
Barry Digby
★ 1.3k
1
vote
0
replies
621
views
Answer:
Answer: CIRIexplorer2 annotate
21 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
6.8k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
22 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
6.8k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
23 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
6.8k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
23 months ago by
Barry Digby
★ 1.3k
16
votes
9
replies
6.8k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 21 months ago by
dk0319
▴ 70 • written 2.3 years ago by
Barry Digby
★ 1.3k
2
votes
0
replies
1.1k
views
Comment:
Comment: how does annotate circular RNA ?
2.3 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
1.1k
views
Answer:
Answer: how does annotate circular RNA ?
2.3 years ago by
Barry Digby
★ 1.3k
3
votes
0
replies
3.4k
views
Answer:
Answer: need some help on how to use DESeq2 for TCGA data
2.3 years ago by
Barry Digby
★ 1.3k
3
votes
1
reply
912
views
Answer:
Answer: GEOquery: unable to fetch raw CEL files
2.5 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
3.0k
views
Answer:
Answer: BUSCO installation and run
2.6 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
3.1k
views
Comment:
Comment: Add NES value to GSEA plot
2.7 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
2.1k
views
Comment:
Comment: TCGA library type information
2.8 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.1k
views
Comment:
Comment: TCGA library type information
2.8 years ago by
Barry Digby
★ 1.3k
3
votes
0
replies
1.6k
views
Comment:
C: Getting standard 12-column format for a list of genes
3.0 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
756
views
Comment:
C: how to annotate Circular RNA gene type?
3.0 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
756
views
Comment:
C: how to annotate Circular RNA gene type?
3.0 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.7k
views
Comment:
C: nextflow set tuple issue
3.0 years ago by
Barry Digby
★ 1.3k
4
votes
1
reply
2.7k
views
Answer:
A: nextflow set tuple issue
3.0 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
9.2k
views
Comment:
C: How to plot GSEA result?
3.1 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.7k
views
Comment:
C: Which adapters to use for trimming?
3.2 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.7k
views
Comment:
C: Which adapters to use for trimming?
3.2 years ago by
Barry Digby
★ 1.3k
2
votes
1
reply
1.5k
views
Answer:
A: How to remove X & Y chromosome genes from RNAseq data
3.2 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
1.5k
views
Comment:
C: How to remove X & Y chromosome genes from RNAseq data
3.2 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
9.2k
views
Comment:
C: How to plot GSEA result?
3.2 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.8k
views
Comment:
C: TCGA gene and mirna expression value
3.2 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.6k
views
Comment:
C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
3.3 years ago by
Barry Digby
★ 1.3k
144 results • Page
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