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0
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0
replies
330
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Comment:
Comment: Help related to HTSEq usage specific for downstream DEXSeq analysis
3 months ago by
Barry Digby
★ 1.3k
1
vote
0
replies
449
views
Answer:
Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
3 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
520
views
Comment:
Comment: Opinion on miRNA pipeline
4 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
520
views
Comment:
Comment: Opinion on miRNA pipeline
4 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
364
views
Comment:
Comment: error uploading gct file to gsea
5 months ago by
Barry Digby
★ 1.3k
1
vote
0
replies
359
views
Answer:
Answer: How to implement neoantigen sequences using WES data?
6 months ago by
Barry Digby
★ 1.3k
3
votes
1
reply
811
views
Answer:
Answer: Unable to save plots in R using jpeg() or png()
6 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
585
views
Comment:
Comment: I cannot obtain summary alignment with Bowtie2
6 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
585
views
Answer:
Answer: I cannot obtain summary alignment with Bowtie2
6 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
661
views
Comment:
Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 6 months ago by
Ram
43k • written 6 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
834
views
Answer:
Answer: identify DEGs across all conditions and per specific conditions
7 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
704
views
Comment:
Comment: obtaining circular RNAs' sequences from circBase
7 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
704
views
Answer:
Answer: obtaining circular RNAs' sequences from circBase
7 months ago by
Barry Digby
★ 1.3k
3
votes
0
replies
647
views
Answer:
Answer: Identifying common DEGs among multiple datasets
7 months ago by
Barry Digby
★ 1.3k
2
votes
0
replies
3.0k
views
Answer:
Answer: Running python script in slurm using conda environment
7 months ago by
Barry Digby
★ 1.3k
3
votes
0
replies
1.1k
views
Answer:
Answer: How to remove the gene label in heatmap RNA-seq
7 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
972
views
Comment:
Comment: No differentially expressed genes after multiple testing correction in mice
11 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
618
views
Comment:
Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
12 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.4k
views
Answer:
Answer: How to run prepDE.py3?
13 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.6k
views
Answer:
Answer: Unusual FastQC sequence distribution from small RNA seq
15 months ago by
Barry Digby
★ 1.3k
2
votes
1
reply
786
views
Answer:
Answer: How do I extract gene names from different portions of my heatmap?
20 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
662
views
Comment:
Comment: circular RNA analysis workflow
20 months ago by
Barry Digby
★ 1.3k
0
votes
5
replies
2.2k
views
Missing gene symbols in bustools output
bustools
scanpy
kallisto
single-cell
scRNA
updated 21 months ago by
s.koturan
• 0 • written 4.3 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
3.2k
views
Comment:
Comment: error while testing nextflow with --genome GRCh38
21 months ago by
Barry Digby
★ 1.3k
1
vote
0
replies
664
views
Answer:
Answer: CIRIexplorer2 annotate
22 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
7.0k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
24 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
7.0k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
2.0 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
7.0k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
2.1 years ago by
Barry Digby
★ 1.3k
16
votes
9
replies
7.0k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 22 months ago by
dk0319
▴ 70 • written 2.4 years ago by
Barry Digby
★ 1.3k
2
votes
0
replies
1.1k
views
Comment:
Comment: how does annotate circular RNA ?
2.4 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
1.1k
views
Answer:
Answer: how does annotate circular RNA ?
2.4 years ago by
Barry Digby
★ 1.3k
3
votes
0
replies
3.6k
views
Answer:
Answer: need some help on how to use DESeq2 for TCGA data
2.4 years ago by
Barry Digby
★ 1.3k
3
votes
1
reply
955
views
Answer:
Answer: GEOquery: unable to fetch raw CEL files
2.6 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
3.1k
views
Answer:
Answer: BUSCO installation and run
2.7 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
3.2k
views
Comment:
Comment: Add NES value to GSEA plot
2.8 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
2.2k
views
Comment:
Comment: TCGA library type information
2.9 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.2k
views
Comment:
Comment: TCGA library type information
2.9 years ago by
Barry Digby
★ 1.3k
3
votes
0
replies
1.6k
views
Comment:
C: Getting standard 12-column format for a list of genes
3.1 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
798
views
Comment:
C: how to annotate Circular RNA gene type?
3.1 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
798
views
Comment:
C: how to annotate Circular RNA gene type?
3.1 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.8k
views
Comment:
C: nextflow set tuple issue
3.1 years ago by
Barry Digby
★ 1.3k
4
votes
1
reply
2.8k
views
Answer:
A: nextflow set tuple issue
3.1 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
9.5k
views
Comment:
C: How to plot GSEA result?
3.2 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.8k
views
Comment:
C: Which adapters to use for trimming?
3.3 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.8k
views
Comment:
C: Which adapters to use for trimming?
3.3 years ago by
Barry Digby
★ 1.3k
2
votes
1
reply
1.6k
views
Answer:
A: How to remove X & Y chromosome genes from RNAseq data
3.3 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
1.6k
views
Comment:
C: How to remove X & Y chromosome genes from RNAseq data
3.3 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
9.5k
views
Comment:
C: How to plot GSEA result?
3.3 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.9k
views
Comment:
C: TCGA gene and mirna expression value
3.3 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.6k
views
Comment:
C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
3.4 years ago by
Barry Digby
★ 1.3k
144 results • Page
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