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Has anyone tried "star --readFilesManifest manifest.tsv" and then "featureCounts --byReadGroup" to quickly get gene quantification for multiple sampl…
RNA-Seq
STAR
featureCounts
3.7 years ago by
Xianjun
▴ 310
5
votes
10
replies
4.9k
views
How to generate random genomic sequences that are GC- and length-matched to my input sequences?
sequence
GC
random
background
updated 4.3 years ago by
Hughie
▴ 30 • written 6.6 years ago by
Xianjun
▴ 310
2
votes
0
replies
2.4k
views
Job:
Research Scientist in Bioinformatics - Brigham and Women's Hospital, Harvard Medical School
Genomics
Neuroscience
Boston
updated 17 months ago by
Ram
44k • written 4.6 years ago by
Xianjun
▴ 310
0
votes
1
reply
46k
views
Comment:
C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
updated 5.1 years ago by
Ram
44k • written 12.0 years ago by
Xianjun
▴ 310
0
votes
0
replies
4.9k
views
Comment:
C: How to generate random genomic sequences that are GC- and length-matched to my i
6.6 years ago by
Xianjun
▴ 310
0
votes
0
replies
4.9k
views
Comment:
C: How to generate random genomic sequences that are GC- and length-matched to my i
6.6 years ago by
Xianjun
▴ 310
0
votes
1
reply
4.9k
views
Comment:
C: How to generate random genomic sequences that are GC- and length-matched to my i
6.6 years ago by
Xianjun
▴ 310
2
votes
1
reply
18k
views
Answer:
A: heatmap.2 reorder branches
7.4 years ago by
Xianjun
▴ 310
4
votes
0
replies
15k
views
Answer:
A: Illumina'S Genome Studio Final Report: Forward Or Top Allele?
8.0 years ago by
Xianjun
▴ 310
6
votes
5
replies
6.0k
views
Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
cufflinks
updated 8.9 years ago by
dina.hesham139
▴ 170 • written 11.0 years ago by
Xianjun
▴ 310
0
votes
0
replies
10k
views
Comment:
Comment: How to correctly use the color option in R image() function?
updated 21 months ago by
Ram
44k • written 9.5 years ago by
Xianjun
▴ 310
9
votes
3
replies
10k
views
How to correctly use the color option in R image() function?
R
image
updated 21 months ago by
Ram
44k • written 9.5 years ago by
Xianjun
▴ 310
3
votes
0
replies
10k
views
Answer:
Answer: How to correctly use the color option in R image() function?
updated 21 months ago by
Ram
44k • written 9.5 years ago by
Xianjun
▴ 310
1
vote
0
replies
23k
views
Answer:
Answer: Bed File With Introns Only
updated 3.4 years ago by
Ram
44k • written 9.6 years ago by
Xianjun
▴ 310
3
votes
0
replies
4.2k
views
Are the rlog or VST values from DESeq2 comparable across genes?
DESeq2
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
Xianjun
▴ 310
0
votes
0
replies
47k
views
Comment:
Comment: Why Are There Many Rna-Seq Hits To Intronic Regions?
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
Xianjun
▴ 310
3
votes
1
reply
4.1k
views
Answer:
Answer: How To Generate Random Size Matched Background Regions
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
Xianjun
▴ 310
0
votes
4
replies
4.1k
views
cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in the tracking_id column
Cufflinks
isoforms.fpkm_tracking
RNA-Seq
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
Xianjun
▴ 310
0
votes
0
replies
4.1k
views
Comment:
Comment: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
Xianjun
▴ 310
0
votes
0
replies
4.1k
views
Comment:
C: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
10.3 years ago by
Xianjun
▴ 310
27
votes
8
replies
11k
views
7 follow
Any Quick Sort Method For Large Bed File As 20G In Size?
sort
bed
updated 9 months ago by
Dan
▴ 540 • written 11.7 years ago by
Xianjun
▴ 310
0
votes
0
replies
3.5k
views
Job:
Computational Biologist In Brain Research, Harvard Medical School, Boston, Us
bioinformatician
postdoc
updated 20 months ago by
Ram
44k • written 10.7 years ago by
Xianjun
▴ 310
0
votes
0
replies
6.0k
views
Answer:
A: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
11.0 years ago by
Xianjun
▴ 310
0
votes
0
replies
6.0k
views
Comment:
C: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
11.0 years ago by
Xianjun
▴ 310
0
votes
0
replies
6.0k
views
Comment:
C: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
11.0 years ago by
Xianjun
▴ 310
0
votes
0
replies
11k
views
Comment:
C: Any Quick Sort Method For Large Bed File As 20G In Size?
11.7 years ago by
Xianjun
▴ 310
0
votes
1
reply
11k
views
Comment:
C: Any Quick Sort Method For Large Bed File As 20G In Size?
11.7 years ago by
Xianjun
▴ 310
1
vote
0
replies
46k
views
Comment:
C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
12.0 years ago by
Xianjun
▴ 310
1
vote
0
replies
9.6k
views
Answer:
A: A Question About The Sam Entry For A Query Aligned To Multiple Places
12.3 years ago by
Xianjun
▴ 310
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