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0
votes
0
replies
282
views
Comment:
Comment: What to do if I have both pre-treatment AND WT samples from a CRISPRscreen to an
3 months ago by
chrisgr
▴ 20
0
votes
2
replies
282
views
What to do if I have both pre-treatment AND WT samples from a CRISPRscreen to analyse
crispr
mageck
crisprscreen
screening
3 months ago by
chrisgr
▴ 20
0
votes
0
replies
467
views
GATK CollectReadCounts UnsatisfiedLinkError hdf5 java
unsatisfiedlinkerror
gatk
hdf5
collectreadcounts
java
19 months ago by
chrisgr
▴ 20
0
votes
0
replies
5.8k
views
Comment:
Comment: Maximum Read Depth
21 months ago by
chrisgr
▴ 20
0
votes
1
reply
5.6k
views
Comment:
Comment: GATK4 VariantRecalibrator resource error
21 months ago by
chrisgr
▴ 20
0
votes
0
replies
392
views
Help wanted for a struggling bioinfmatician! GATK Variantrecalibration
VSQR
applyVSQR
gatk
variantrecalibration
21 months ago by
chrisgr
▴ 20
0
votes
0
replies
980
views
Comment:
Comment: Filtering VCF files
21 months ago by
chrisgr
▴ 20
0
votes
2
replies
980
views
Filtering VCF files
Filtering
GATK
HaplotypeCaller
mapping
VCF
updated 21 months ago by
Pierre Lindenbaum
165k • written 21 months ago by
chrisgr
▴ 20
0
votes
1
reply
574
views
Novogene somatic results with GATK mutect2
Mutect2
Novogene
GATK
somatic
VCF
updated 2.0 years ago by
GenoMax
149k • written 2.0 years ago by
chrisgr
▴ 20
0
votes
0
replies
2.1k
views
Comment:
Comment: IGV coverage bar has color, but no mutation?
2.0 years ago by
chrisgr
▴ 20
0
votes
0
replies
2.1k
views
Comment:
Comment: IGV coverage bar has color, but no mutation?
2.0 years ago by
chrisgr
▴ 20
0
votes
2
replies
2.1k
views
Comment:
Comment: IGV coverage bar has color, but no mutation?
2.0 years ago by
chrisgr
▴ 20
4
votes
6
replies
2.1k
views
IGV coverage bar has color, but no mutation?
mutation
IGV
2.0 years ago by
chrisgr
▴ 20
0
votes
0
replies
2.5k
views
Comment:
Comment: RNAseq count which strand to use
3.1 years ago by
chrisgr
▴ 20
0
votes
0
replies
4.1k
views
Comment:
Comment: Enrichr input genes, up, down, or both at once
3.3 years ago by
chrisgr
▴ 20
0
votes
1
reply
4.1k
views
Comment:
Comment: Enrichr input genes, up, down, or both at once
3.3 years ago by
chrisgr
▴ 20
5
votes
6
replies
4.1k
views
Enrichr input genes, up, down, or both at once
genes
Enrichr
DEA
updated 3.3 years ago by
EagleEye
7.6k • written 3.3 years ago by
chrisgr
▴ 20
0
votes
0
replies
1.7k
views
Comment:
Comment: BCFtools Allelic Depth format nowhere explained?
3.4 years ago by
chrisgr
▴ 20
0
votes
1
reply
1.7k
views
Comment:
Comment: BCFtools Allelic Depth format nowhere explained?
3.4 years ago by
chrisgr
▴ 20
1
vote
5
replies
1.7k
views
BCFtools Allelic Depth format nowhere explained?
Allelic
Samtools
BCFtools
Depth
AD
3.4 years ago by
chrisgr
▴ 20
0
votes
0
replies
1.7k
views
Comment:
Comment: BCFtools Allelic Depth format nowhere explained?
3.4 years ago by
chrisgr
▴ 20
2
votes
2
replies
798
views
Bowtie2 adds insertions instead of allowing extention
bowtie2
short reads
aligning
insertions
4.7 years ago by
chrisgr
▴ 20
0
votes
0
replies
1.4k
views
Comment:
C: how to build bowtie2 reference sequences
4.8 years ago by
chrisgr
▴ 20
1
vote
1
reply
1.4k
views
Comment:
C: how to build bowtie2 reference sequences
4.8 years ago by
chrisgr
▴ 20
0
votes
1
reply
1.4k
views
Comment:
C: how to build bowtie2 reference sequences
4.8 years ago by
chrisgr
▴ 20
5
votes
6
replies
1.4k
views
how to build bowtie2 reference sequences
bowtie2
reference sequence
bowtie2-build
IGV tools
updated 4.8 years ago by
GenoMax
149k • written 4.8 years ago by
chrisgr
▴ 20
0
votes
1
reply
3.7k
views
Comment:
C: visualize my .BAM file in IGV
4.8 years ago by
chrisgr
▴ 20
0
votes
1
reply
3.7k
views
Comment:
C: visualize my .BAM file in IGV
4.8 years ago by
chrisgr
▴ 20
4
votes
8
replies
3.7k
views
visualize my .BAM file in IGV
RNA
bowtie2
IGV
alignment
BAM
updated 23 months ago by
Ram
44k • written 4.8 years ago by
chrisgr
▴ 20
3
votes
2
replies
4.7k
views
In Enrichr: What is "Gene weight" or "levels of membership"?
enrichr
GEA
Gene enrichment analyis
updated 6.5 years ago by
Ram
44k • written 6.5 years ago by
chrisgr
▴ 20
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