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Comment: Comment: What to do if I have both pre-treatment AND WT samples from a CRISPRscreen to an
5 months ago by chrisgr ▴ 20
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2
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351
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What to do if I have both pre-treatment AND WT samples from a CRISPRscreen to analyse
crispr mageck crisprscreen screening
5 months ago by chrisgr ▴ 20
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510
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GATK CollectReadCounts UnsatisfiedLinkError hdf5 java
unsatisfiedlinkerror gatk hdf5 collectreadcounts java
21 months ago by chrisgr ▴ 20
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5.9k
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Comment: Comment: Maximum Read Depth
23 months ago by chrisgr ▴ 20
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5.7k
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Comment: Comment: GATK4 VariantRecalibrator resource error
23 months ago by chrisgr ▴ 20
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418
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Help wanted for a struggling bioinfmatician! GATK Variantrecalibration
VSQR applyVSQR gatk variantrecalibration
23 months ago by chrisgr ▴ 20
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1.1k
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Comment: Comment: Filtering VCF files
23 months ago by chrisgr ▴ 20
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2
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1.1k
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Filtering VCF files
Filtering GATK HaplotypeCaller mapping VCF
updated 23 months ago by 166k • written 23 months ago by ▴ 20
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1
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616
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Novogene somatic results with GATK mutect2
Mutect2 Novogene GATK somatic VCF
updated 2.2 years ago by 150k • written 2.2 years ago by ▴ 20
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2.4k
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Comment: Comment: IGV coverage bar has color, but no mutation?
2.2 years ago by chrisgr ▴ 20
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2.4k
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Comment: Comment: IGV coverage bar has color, but no mutation?
2.2 years ago by chrisgr ▴ 20
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2
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2.4k
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Comment: Comment: IGV coverage bar has color, but no mutation?
2.2 years ago by chrisgr ▴ 20
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6
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2.4k
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IGV coverage bar has color, but no mutation?
mutation IGV
2.2 years ago by chrisgr ▴ 20
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2.6k
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Comment: Comment: RNAseq count which strand to use
3.3 years ago by chrisgr ▴ 20
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4.4k
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Comment: Comment: Enrichr input genes, up, down, or both at once
3.5 years ago by chrisgr ▴ 20
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1
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4.4k
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Comment: Comment: Enrichr input genes, up, down, or both at once
3.5 years ago by chrisgr ▴ 20
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6
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4.4k
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Enrichr input genes, up, down, or both at once
genes Enrichr DEA
updated 3.5 years ago by 7.6k • written 3.5 years ago by ▴ 20
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1.8k
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Comment: Comment: BCFtools Allelic Depth format nowhere explained?
3.6 years ago by chrisgr ▴ 20
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1
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1.8k
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Comment: Comment: BCFtools Allelic Depth format nowhere explained?
3.6 years ago by chrisgr ▴ 20
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5
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1.8k
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BCFtools Allelic Depth format nowhere explained?
Allelic Samtools BCFtools Depth AD
3.6 years ago by chrisgr ▴ 20
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1.8k
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Comment: Comment: BCFtools Allelic Depth format nowhere explained?
3.6 years ago by chrisgr ▴ 20
2
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2
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843
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Bowtie2 adds insertions instead of allowing extention
bowtie2 short reads aligning insertions
4.9 years ago by chrisgr ▴ 20
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1.5k
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Comment: C: how to build bowtie2 reference sequences
4.9 years ago by chrisgr ▴ 20
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1
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1.5k
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Comment: C: how to build bowtie2 reference sequences
4.9 years ago by chrisgr ▴ 20
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1.5k
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Comment: C: how to build bowtie2 reference sequences
4.9 years ago by chrisgr ▴ 20
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1.5k
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how to build bowtie2 reference sequences
bowtie2 reference sequence bowtie2-build IGV tools
updated 4.9 years ago by 150k • written 4.9 years ago by ▴ 20
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4.1k
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Comment: C: visualize my .BAM file in IGV
5.0 years ago by chrisgr ▴ 20
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1
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4.1k
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Comment: C: visualize my .BAM file in IGV
5.0 years ago by chrisgr ▴ 20
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8
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4.1k
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visualize my .BAM file in IGV
RNA bowtie2 IGV alignment BAM
updated 2.1 years ago by 45k • written 5.0 years ago by ▴ 20
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2
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4.8k
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In Enrichr: What is "Gene weight" or "levels of membership"?
enrichr GEA Gene enrichment analyis
updated 6.7 years ago by 45k • written 6.7 years ago by ▴ 20
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