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2.0k
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Using Blobtools to remove sequence contamination
blobtools
updated 7 months ago by 43k • written 3.9 years ago by ▴ 170
0
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1
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1.5k
views
Please interpret QUAST output.
de-novo-assembly contigs QUAST
4.2 years ago by kristina.mahan ▴ 170
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0
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1.0k
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Comment: C: PacBio Sequel data
4.3 years ago by kristina.mahan ▴ 170
0
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1
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1.0k
views
PacBio Sequel data
subreads.bam pacbio sequel de novo genome assembly
updated 4.3 years ago by 142k • written 4.3 years ago by ▴ 170
0
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1
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948
views
Comment: C: Mapping reads to nuclear, chloroplast, and mitochondria genome separately but al
4.4 years ago by kristina.mahan ▴ 170
3
votes
4
replies
948
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Mapping reads to nuclear, chloroplast, and mitochondria genome separately but all resulting bam files are similar sizes
chloroplast bwa-mem mitochondrial-genome
updated 7 months ago by 43k • written 4.4 years ago by ▴ 170
7
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10
replies
5.1k
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Does anybody know how to do a local install of samtools on centos without using sudo?
centos samtools
updated 7 months ago by 43k • written 5.6 years ago by ▴ 170
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1
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4.7k
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Comment: A: Error when trying to run IGV on server
4.6 years ago by kristina.mahan ▴ 170
2
votes
2
replies
2.1k
views
Plotting Allele Frequencies
variant-analysis
updated 7 months ago by 43k • written 4.8 years ago by ▴ 170
1
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0
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5.5k
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Comment: C: VCF file analysis to find genome wide association
4.8 years ago by kristina.mahan ▴ 170
0
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1
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5.5k
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Comment: C: VCF file analysis to find genome wide association
4.8 years ago by kristina.mahan ▴ 170
0
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1
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5.5k
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Comment: C: VCF file analysis to find genome wide association
4.8 years ago by kristina.mahan ▴ 170
0
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0
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4.9k
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Comment: C: filtering the somatic variants
5.5 years ago by kristina.mahan ▴ 170
0
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1
reply
1.3k
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Comment: C: Visualize Variant Density using Python
5.5 years ago by kristina.mahan ▴ 170
0
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1
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2.2k
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Comment: C: How to annotate chloroplast genome
5.5 years ago by kristina.mahan ▴ 170
0
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3
replies
1.3k
views
Visualize Variant Density using Python
variant density python
5.5 years ago by kristina.mahan ▴ 170
0
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1
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2.2k
views
Comment: C: How to annotate chloroplast genome
5.5 years ago by kristina.mahan ▴ 170
3
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5
replies
2.2k
views
How to annotate chloroplast genome
bam gff
updated 13 months ago by 43k • written 5.5 years ago by ▴ 170
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0
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1.5k
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Comment: C: Plot line graph when counts are not automatically given
5.6 years ago by kristina.mahan ▴ 170
0
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1
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1.5k
views
Comment: C: Plot line graph when counts are not automatically given
5.6 years ago by kristina.mahan ▴ 170
1
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1
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2.0k
views
Comment: C: Debugging a sed script to extract values from rows in .txt file
5.6 years ago by kristina.mahan ▴ 170
0
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1
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2.0k
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Comment: C: Debugging a sed script to extract values from rows in .txt file
5.6 years ago by kristina.mahan ▴ 170
0
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3
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2.0k
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Comment: C: Debugging a sed script to extract values from rows in .txt file
5.6 years ago by kristina.mahan ▴ 170
0
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1
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2.0k
views
Comment: C: Debugging a sed script to extract values from rows in .txt file
5.6 years ago by kristina.mahan ▴ 170
15
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12
replies
2.0k
views
Debugging a sed script to extract values from rows in .txt file
unix sed
updated 7 months ago by 43k • written 5.6 years ago by ▴ 170
5
votes
4
replies
1.5k
views
Plot line graph when counts are not automatically given
R vcf depth ggplot2
updated 5.6 years ago by 11k • written 5.6 years ago by ▴ 170
0
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0
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2.2k
views
Comment: C: Spades Assembly stopping
5.6 years ago by kristina.mahan ▴ 170
0
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1
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2.2k
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Comment: C: Spades Assembly stopping
5.6 years ago by kristina.mahan ▴ 170
0
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0
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3.4k
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Comment: C: Issues with mapping reads onto Reference genome using bwa mem
5.6 years ago by kristina.mahan ▴ 170
0
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0
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5.1k
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Comment: C: Does anybody know how to do a local install of samtools on centos without using
5.6 years ago by kristina.mahan ▴ 170
0
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0
replies
15k
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Answer: A: Unable to access jarfile trimmomatic-0.35
5.6 years ago by kristina.mahan ▴ 170
0
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1
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3.4k
views
Comment: C: Issues with mapping reads onto Reference genome using bwa mem
5.6 years ago by kristina.mahan ▴ 170
0
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1
reply
2.2k
views
Comment: C: Spades Assembly stopping
5.6 years ago by kristina.mahan ▴ 170
0
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8
replies
2.2k
views
Spades Assembly stopping
Spades
updated 7 months ago by 43k • written 5.6 years ago by ▴ 170
0
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1
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3.4k
views
Comment: C: Issues with mapping reads onto Reference genome using bwa mem
updated 5.6 years ago by 35k • written 5.6 years ago by ▴ 170
0
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0
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3.4k
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Comment: A: Issues with mapping reads onto Reference genome using bwa mem
5.6 years ago by kristina.mahan ▴ 170
1
vote
9
replies
3.4k
views
Issues with mapping reads onto Reference genome using bwa mem
BWA-MEM alignment
updated 7 months ago by 43k • written 5.6 years ago by ▴ 170
2
votes
3
replies
1.8k
views
Trimmomatic execution removes the data from my fastq sequence file. What am I doing wrong?
Trimmomatic
5.6 years ago by kristina.mahan ▴ 170
0
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0
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1.8k
views
Comment: A: Trimmomatic execution removes the data from my fastq sequence file. What am I do
5.6 years ago by kristina.mahan ▴ 170
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