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0
votes
1
reply
1.2k
views
Mate mismatch errors in 1000genomes CRAM files
1000genomes
Matepairs
CRAM
ValidateSAM
FixMate
5.8 years ago by
Mehulsharma.253
▴ 30
0
votes
0
replies
2.9k
views
Comment:
C: Convert specific regions in bam file to vcf and annotating the vcf
5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
1
reply
2.6k
views
Comment:
C: How to choose good tools for identifying functional SNPs?
5.9 years ago by
Mehulsharma.253
▴ 30
2
votes
1
reply
2.7k
views
CRAM reference registry and the GRch38 reference genome
BAM
Samtools
GRCh38
CRAM
Variant-Calling
updated 7 months ago by
Ram
44k • written 5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
1
reply
1.5k
views
Dealing with a large sample for variant calling
NGS
alignment
variant-calling
joint-calling
updated 7 months ago by
Ram
44k • written 5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
1
reply
3.8k
views
Comment:
C: Bash vs WDL for running GATK
5.9 years ago by
Mehulsharma.253
▴ 30
4
votes
3
replies
1.5k
views
GATK best practices for Broad-produced NGS data
NGS
GATK4
BroadInstitute
Variant-Calling
updated 7 months ago by
Ram
44k • written 5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
0
replies
1.2k
views
Effect of dbSNP build differences in variant calling
GRCh38
dbSNP
variant-calling
GATK
assembly
updated 7 months ago by
Ram
44k • written 5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
0
replies
1.5k
views
Comment:
C: GATK best practices for Broad-produced NGS data
5.9 years ago by
Mehulsharma.253
▴ 30
6
votes
4
replies
3.8k
views
Bash vs WDL for running GATK
GATK
Linux
Pipeline
WDL
Cromwell
updated 5.9 years ago by
vdauwera
★ 1.2k • written 5.9 years ago by
Mehulsharma.253
▴ 30
1
vote
1
reply
4.8k
views
Warning in GATK Picard MarkDuplicates
GATK
Picard
MarkDuplicates
Variant Calling
updated 5.9 years ago by
Pierre Lindenbaum
164k • written 5.9 years ago by
Mehulsharma.253
▴ 30
1
vote
0
replies
29k
views
Answer:
A: Out Of Disk Space With Picard Tools ?
5.9 years ago by
Mehulsharma.253
▴ 30
1
vote
0
replies
4.1k
views
Answer:
A: Setting temporary directory for GATK4 SortSam
5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
0
replies
5.6k
views
Answer:
A: Temporary Directory Problem in GATK4
5.9 years ago by
Mehulsharma.253
▴ 30
3
votes
2
replies
4.1k
views
Setting temporary directory for GATK4 SortSam
Linux
software error
GATK4
picard
tmpdir
5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
1
reply
6.4k
views
Comment:
C: Inclusion of ALT contigs and decoys in bwa alignment
5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
1
reply
6.4k
views
Comment:
C: Inclusion of ALT contigs and decoys in bwa alignment
updated 5.9 years ago by
ATpoint
85k • written 5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
2
replies
29k
views
Comment:
C: Out Of Disk Space With Picard Tools ?
5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
0
replies
3.2k
views
Comment:
C: Can someone explain what the -M option in BWA-MEM does?
5.9 years ago by
Mehulsharma.253
▴ 30
10
votes
6
replies
6.4k
views
Inclusion of ALT contigs and decoys in bwa alignment
bwa
NGS
alignment
hg38
bwa.kit
5.9 years ago by
Mehulsharma.253
▴ 30
0
votes
1
reply
1.5k
views
Comment:
C: Tabix ouputs a non-specified region VCF
6.0 years ago by
Mehulsharma.253
▴ 30
2
votes
5
replies
1.5k
views
Tabix ouputs a non-specified region VCF
SNP
next-gen
6.0 years ago by
Mehulsharma.253
▴ 30
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