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Comment: C: Interpreting plink snp tagging output
5.1 years ago by RNAseqer ▴ 270
0
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2.7k
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Comment: C: Interpreting plink snp tagging output
5.1 years ago by RNAseqer ▴ 270
2
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3
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1.7k
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Plink recode option to get genomic position?
plink SNP locus
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 270
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0
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1.7k
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Comment: C: Plink recode option to get genomic position?
5.1 years ago by RNAseqer ▴ 270
0
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1
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2.7k
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Comment: C: Interpreting plink snp tagging output
5.1 years ago by RNAseqer ▴ 270
0
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1
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2.7k
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Comment: C: Interpreting plink snp tagging output
5.1 years ago by RNAseqer ▴ 270
0
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1
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2.7k
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Comment: C: Interpreting plink snp tagging output
5.1 years ago by RNAseqer ▴ 270
8
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10
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2.7k
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Interpreting plink snp tagging output
plink SNP
updated 5.1 years ago by 10k • written 5.1 years ago by ▴ 270
0
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0
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5.3k
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Comment: C: Filtering SNPS by minimum LD value in bcftools?
5.1 years ago by RNAseqer ▴ 270
3
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2
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5.3k
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Filtering SNPS by minimum LD value in bcftools?
bcftools vcftools vcf LD r2
5.1 years ago by RNAseqer ▴ 270
1
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5.0k
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Comment: C: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
5.1 years ago by RNAseqer ▴ 270
12
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5
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5.0k
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rowVars function, used in ballgown analysis not available for R 3.5.2, alternatives?
R rna-seq ballgown rowVars
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 270
0
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1
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5.0k
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Comment: C: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
5.2 years ago by RNAseqer ▴ 270
0
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0
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2.8k
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Comment: C: ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls
5.2 years ago by RNAseqer ▴ 270
0
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1
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2.8k
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Comment: C: ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls
5.2 years ago by RNAseqer ▴ 270
0
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4
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2.8k
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ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls: ballgown -> read.table -> file
ballgown RNA-Seq stringtie
5.2 years ago by RNAseqer ▴ 270
0
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2
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2.4k
views
No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
gffcompare .stats. accuracy precision
5.2 years ago by RNAseqer ▴ 270
1
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1
reply
1.5k
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Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
Bash Shell HISAT2
updated 11 months ago by 43k • written 5.2 years ago by ▴ 270
0
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0
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2.7k
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Comment: C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
5.2 years ago by RNAseqer ▴ 270
0
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0
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2.7k
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Comment: C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
5.2 years ago by RNAseqer ▴ 270
0
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0
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5.7k
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Comment: C: how to get Homo_sapiens.GRCh38.84.bed file
5.2 years ago by RNAseqer ▴ 270
2
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7
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2.7k
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samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. ValueError: file has no sequences defined (mode='rb')
samtools bam RSeQC bam_stats.py (mode='rb')
updated 5.2 years ago by 47k • written 5.2 years ago by ▴ 270
0
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1
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2.7k
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Comment: C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
5.2 years ago by RNAseqer ▴ 270
0
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1
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5.7k
views
Comment: C: how to get Homo_sapiens.GRCh38.84.bed file
5.2 years ago by RNAseqer ▴ 270
0
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0
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3.0k
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Comment: C: Hisat2 -Can it align paired readfiles, and unpaired read files leftover from tri
5.2 years ago by RNAseqer ▴ 270
0
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0
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3.0k
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Comment: C: Hisat2 -Can it align paired readfiles, and unpaired read files leftover from tri
5.2 years ago by RNAseqer ▴ 270
0
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4
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3.0k
views
Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
rna-seq alignment HISAT2 Paired end
updated 5.2 years ago by 35k • written 5.2 years ago by ▴ 270
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