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0
votes
0
replies
251
views
Spatt2.1 a mirMap dependency, anyone know where I can get it?
miRmap
dependency
tarball
12 weeks ago by
RNAseqer
▴ 280
0
votes
0
replies
477
views
Comment:
Comment: identifying 3'utrs for multiple transcripts of genes from a summarized experimen
12 weeks ago by
RNAseqer
▴ 280
4
votes
2
replies
477
views
identifying 3'utrs for multiple transcripts of genes from a summarized experiment.
biomart
transcriptome
utr
12 weeks ago by
RNAseqer
▴ 280
1
vote
0
replies
721
views
Comment:
Comment: samtools version 1.17 having difficulty parsing a filtering command. advice?
5 months ago by
RNAseqer
▴ 280
1
vote
3
replies
721
views
samtools version 1.17 having difficulty parsing a filtering command. advice?
samtools
cell
rnaseq
single
updated 5 months ago by
aw7
▴ 370 • written 5 months ago by
RNAseqer
▴ 280
0
votes
3
replies
695
views
Biomart issue, why so few 3'utrs?
utr
biomart
updated 12 months ago by
GenoMax
151k • written 12 months ago by
RNAseqer
▴ 280
0
votes
0
replies
504
views
Comment:
Comment: mirbase gff and mature fastas for custom STAR index genome?
13 months ago by
RNAseqer
▴ 280
0
votes
1
reply
438
views
sorted bam file generated from gff transcript fastas, how to get counts with HTseq?
htseq
bam
updated 13 months ago by
Ram
45k • written 13 months ago by
RNAseqer
▴ 280
0
votes
1
reply
504
views
mirbase gff and mature fastas for custom STAR index genome?
mirbase
indexing
star
genome
13 months ago by
RNAseqer
▴ 280
0
votes
2
replies
1.5k
views
Comment:
Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
17 months ago by
RNAseqer
▴ 280
3
votes
4
replies
1.5k
views
Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not present in R
FDR
volcano
plotting
R
plot
updated 17 months ago by
Nitin Narwade
★ 1.6k • written 17 months ago by
RNAseqer
▴ 280
1
vote
2
replies
2.2k
views
junction_annotation.py: How many 'novel' splice junctions/splice events are resonably expected from human RNA,
RNA-Seq
junction_annotation.py
human
updated 20 months ago by
Nicolas Lichilin
▴ 20 • written 6.2 years ago by
RNAseqer
▴ 280
2
votes
1
reply
1.2k
views
coef /makeContrasts very different results
makeContrasts
coef2
edgeR
updated 24 months ago by
Gordon Smyth
★ 8.0k • written 2.1 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.1k
views
mirge3.0 custom miRNA db option
database
custom
miRNA
mirge3.0
updated 2.2 years ago by
arun
• 0 • written 3.9 years ago by
RNAseqer
▴ 280
6
votes
2
replies
2.2k
views
WGCNA: outputting multiple hubgenes from a module
WGCNA
HubGenes
updated 2.8 years ago by
tiancaigg
▴ 30 • written 4.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
458
views
custom sizing question in ggseqlogo. sequence logo creation
logo
sequence
R
ggseqlogo
2.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
450
views
geo database for integrated miRNA-mRNA sequencing of neural cell
mir-seq
mrna-seq
3.2 years ago by
RNAseqer
▴ 280
0
votes
0
replies
439
views
How to get a screeplot of surrogate variables from sva()
screeplot
sva
svaseq
3.2 years ago by
RNAseqer
▴ 280
0
votes
0
replies
788
views
WGCNA, module preservation over permutations, how to?
module
WGCNA
preservation
3.4 years ago by
RNAseqer
▴ 280
0
votes
0
replies
10k
views
Comment:
Comment: convert from plink format into 012 format
3.4 years ago by
RNAseqer
▴ 280
0
votes
0
replies
565
views
what regression model does step() in R use
lm
function
R
model
stepwise
3.5 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.1k
views
How to extract beta coefficients from edgeR output
rnaseq
beta
coefficient
r
edger
updated 3.5 years ago by
Gordon Smyth
★ 8.0k • written 3.6 years ago by
RNAseqer
▴ 280
2
votes
1
reply
797
views
EdgeR exclude 0 count subjects for each gene
count
edgeR
R
updated 3.5 years ago by
Gordon Smyth
★ 8.0k • written 3.5 years ago by
RNAseqer
▴ 280
0
votes
0
replies
619
views
How do you convert vcf file to a genotype file useable by eigenstrat
conversion
vcf
format
eigenstrat
3.5 years ago by
RNAseqer
▴ 280
0
votes
0
replies
704
views
accessing the r-peer docker container.
docker
peer
r
3.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
833
views
Analysis of a SNPs moderating effect on disease
SNP
moderating-effect
updated 8 months ago by
Ram
45k • written 3.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.2k
views
Comment:
Comment: Most well regarded piRNA detection pipeline/program
3.6 years ago by
RNAseqer
▴ 280
5
votes
2
replies
1.2k
views
Most well regarded piRNA detection pipeline/program
expression
piRNA
differential
smallRNAseq
detection
3.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
576
views
how to identiify real isomers in mirge3.0's output files.
isomirs
mirge3.0
3.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.2k
views
REditools2 (HPC-reditools) de-novo editing prediction from RNAseq?
editing
reditools2
prediction
RNAseq
3.7 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.1k
views
Comment:
Comment: what is the best R package/function to perform an Equality of variance F-test on
3.8 years ago by
RNAseqer
▴ 280
0
votes
3
replies
1.1k
views
what is the best R package/function to perform an Equality of variance F-test on TMM log2 gene expression values
gene-expression
F-test
equality-of-variance
updated 3.8 years ago by
ATpoint
88k • written 3.8 years ago by
RNAseqer
▴ 280
0
votes
0
replies
558
views
Can you get individual sample counts from Spar (Small RNA-seq portal for analysis of sequencing experiments)
Differential
RNAseq
SPAR
Expression
4.0 years ago by
RNAseqer
▴ 280
0
votes
0
replies
642
views
getting residuals from dream
dream
limma
residuals
4.1 years ago by
RNAseqer
▴ 280
0
votes
0
replies
649
views
limma dream giving error message 'subscript out of bounds'
error
Dream
R
4.1 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.1k
views
alternative package for littlesMCAR() or mcar_test()
littlesMCAR
MCAR
missingdata
4.1 years ago by
RNAseqer
▴ 280
5
votes
2
replies
1.0k
views
Heirarchal regression for model comparison, RNA-seq
R
RNA-seq
heirarchalregression
updated 4.1 years ago by
ATpoint
88k • written 4.1 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.9k
views
Comment:
Comment: chi squared assesment of gene expression and batch effect
4.1 years ago by
RNAseqer
▴ 280
1
vote
5
replies
1.9k
views
chi squared assesment of gene expression and batch effect
RNA-Seq
r
chi squared
4.1 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.2k
views
model matrix error message 'unequal columns/rows' when using a conditional variable
rna-seq
categorical variables
edger
updated 4.1 years ago by
Gordon Smyth
★ 8.0k • written 4.2 years ago by
RNAseqer
▴ 280
0
votes
1
reply
780
views
Nesting a covariate for differential expression design
RNA-Seq
nested
covariates
updated 4.1 years ago by
Biostar
20 • written 4.2 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.9k
views
Comment:
C: chi squared assesment of gene expression and batch effect
4.2 years ago by
RNAseqer
▴ 280
1
vote
0
replies
866
views
Answer:
A: voomWithDreamWeights() has missing "NA" wheights for last samples
4.2 years ago by
RNAseqer
▴ 280
1
vote
1
reply
866
views
voomWithDreamWeights() has missing "NA" wheights for last samples
voomWithDreamWeights
dream
variaincePartition
4.2 years ago by
RNAseqer
▴ 280
3
votes
4
replies
4.1k
views
GSEA pvalue output of 0.0. Can I make it more specific?
GSEA
P-value
updated 4.2 years ago by
alserg
▴ 1000 • written 4.8 years ago by
RNAseqer
▴ 280
0
votes
0
replies
6.7k
views
Comment:
C: A question regarding log2 transformation in EdgeR
4.2 years ago by
RNAseqer
▴ 280
11
votes
4
replies
6.7k
views
A question regarding log2 transformation in EdgeR
EdgeR
log2
differentail expression analysis
updated 4.2 years ago by
Gordon Smyth
★ 8.0k • written 4.2 years ago by
RNAseqer
▴ 280
0
votes
1
reply
6.7k
views
Comment:
C: A question regarding log2 transformation in EdgeR
4.2 years ago by
RNAseqer
▴ 280
0
votes
0
replies
735
views
package for ICC plots from a matrix?
ICC
plots
R
4.3 years ago by
RNAseqer
▴ 280
0
votes
0
replies
959
views
Comment:
C: Is miarma-Seq being maintained?
4.4 years ago by
RNAseqer
▴ 280
133 results • Page
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