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0
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251
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Spatt2.1 a mirMap dependency, anyone know where I can get it?
miRmap dependency tarball
12 weeks ago by RNAseqer ▴ 280
0
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0
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477
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Comment: Comment: identifying 3'utrs for multiple transcripts of genes from a summarized experimen
12 weeks ago by RNAseqer ▴ 280
4
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2
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477
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identifying 3'utrs for multiple transcripts of genes from a summarized experiment.
biomart transcriptome utr
12 weeks ago by RNAseqer ▴ 280
1
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0
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721
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Comment: Comment: samtools version 1.17 having difficulty parsing a filtering command. advice?
5 months ago by RNAseqer ▴ 280
1
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3
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721
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samtools version 1.17 having difficulty parsing a filtering command. advice?
samtools cell rnaseq single
updated 5 months ago by ▴ 370 • written 5 months ago by ▴ 280
0
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3
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695
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Biomart issue, why so few 3'utrs?
utr biomart
updated 12 months ago by 151k • written 12 months ago by ▴ 280
0
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0
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504
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Comment: Comment: mirbase gff and mature fastas for custom STAR index genome?
13 months ago by RNAseqer ▴ 280
0
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1
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438
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sorted bam file generated from gff transcript fastas, how to get counts with HTseq?
htseq bam
updated 13 months ago by 45k • written 13 months ago by ▴ 280
0
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1
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504
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mirbase gff and mature fastas for custom STAR index genome?
mirbase indexing star genome
13 months ago by RNAseqer ▴ 280
0
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2
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1.5k
views
Comment: Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
17 months ago by RNAseqer ▴ 280
3
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4
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1.5k
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Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not present in R
FDR volcano plotting R plot
updated 17 months ago by ★ 1.6k • written 17 months ago by ▴ 280
1
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2
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2.2k
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junction_annotation.py: How many 'novel' splice junctions/splice events are resonably expected from human RNA,
RNA-Seq junction_annotation.py human
updated 20 months ago by ▴ 20 • written 6.2 years ago by ▴ 280
2
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1
reply
1.2k
views
coef /makeContrasts very different results
makeContrasts coef2 edgeR
updated 24 months ago by ★ 8.0k • written 2.1 years ago by ▴ 280
0
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1
reply
1.1k
views
mirge3.0 custom miRNA db option
database custom miRNA mirge3.0
updated 2.2 years ago by • 0 • written 3.9 years ago by ▴ 280
6
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2
replies
2.2k
views
WGCNA: outputting multiple hubgenes from a module
WGCNA HubGenes
updated 2.8 years ago by ▴ 30 • written 4.9 years ago by ▴ 280
0
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0
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458
views
custom sizing question in ggseqlogo. sequence logo creation
logo sequence R ggseqlogo
2.9 years ago by RNAseqer ▴ 280
0
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0
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450
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geo database for integrated miRNA-mRNA sequencing of neural cell
mir-seq mrna-seq
3.2 years ago by RNAseqer ▴ 280
0
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0
replies
439
views
How to get a screeplot of surrogate variables from sva()
screeplot sva svaseq
3.2 years ago by RNAseqer ▴ 280
0
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0
replies
788
views
WGCNA, module preservation over permutations, how to?
module WGCNA preservation
3.4 years ago by RNAseqer ▴ 280
0
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0
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10k
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Comment: Comment: convert from plink format into 012 format
3.4 years ago by RNAseqer ▴ 280
0
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0
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565
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what regression model does step() in R use
lm function R model stepwise
3.5 years ago by RNAseqer ▴ 280
0
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1
reply
1.1k
views
How to extract beta coefficients from edgeR output
rnaseq beta coefficient r edger
updated 3.5 years ago by ★ 8.0k • written 3.6 years ago by ▴ 280
2
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1
reply
797
views
EdgeR exclude 0 count subjects for each gene
count edgeR R
updated 3.5 years ago by ★ 8.0k • written 3.5 years ago by ▴ 280
0
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0
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619
views
How do you convert vcf file to a genotype file useable by eigenstrat
conversion vcf format eigenstrat
3.5 years ago by RNAseqer ▴ 280
0
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0
replies
704
views
accessing the r-peer docker container.
docker peer r
3.6 years ago by RNAseqer ▴ 280
0
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1
reply
833
views
Analysis of a SNPs moderating effect on disease
SNP moderating-effect
updated 8 months ago by 45k • written 3.6 years ago by ▴ 280
0
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0
replies
1.2k
views
Comment: Comment: Most well regarded piRNA detection pipeline/program
3.6 years ago by RNAseqer ▴ 280
5
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2
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1.2k
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Most well regarded piRNA detection pipeline/program
expression piRNA differential smallRNAseq detection
3.6 years ago by RNAseqer ▴ 280
0
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0
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576
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how to identiify real isomers in mirge3.0's output files.
isomirs mirge3.0
3.6 years ago by RNAseqer ▴ 280
0
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0
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1.2k
views
REditools2 (HPC-reditools) de-novo editing prediction from RNAseq?
editing reditools2 prediction RNAseq
3.7 years ago by RNAseqer ▴ 280
0
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1
reply
1.1k
views
Comment: Comment: what is the best R package/function to perform an Equality of variance F-test on
3.8 years ago by RNAseqer ▴ 280
0
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3
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1.1k
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what is the best R package/function to perform an Equality of variance F-test on TMM log2 gene expression values
gene-expression F-test equality-of-variance
updated 3.8 years ago by 88k • written 3.8 years ago by ▴ 280
0
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0
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558
views
Can you get individual sample counts from Spar (Small RNA-seq portal for analysis of sequencing experiments)
Differential RNAseq SPAR Expression
4.0 years ago by RNAseqer ▴ 280
0
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0
replies
642
views
getting residuals from dream
dream limma residuals
4.1 years ago by RNAseqer ▴ 280
0
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0
replies
649
views
limma dream giving error message 'subscript out of bounds'
error Dream R
4.1 years ago by RNAseqer ▴ 280
0
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0
replies
1.1k
views
alternative package for littlesMCAR() or mcar_test()
littlesMCAR MCAR missingdata
4.1 years ago by RNAseqer ▴ 280
5
votes
2
replies
1.0k
views
Heirarchal regression for model comparison, RNA-seq
R RNA-seq heirarchalregression
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 280
0
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0
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1.9k
views
Comment: Comment: chi squared assesment of gene expression and batch effect
4.1 years ago by RNAseqer ▴ 280
1
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5
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1.9k
views
chi squared assesment of gene expression and batch effect
RNA-Seq r chi squared
4.1 years ago by RNAseqer ▴ 280
0
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1
reply
1.2k
views
model matrix error message 'unequal columns/rows' when using a conditional variable
rna-seq categorical variables edger
updated 4.1 years ago by ★ 8.0k • written 4.2 years ago by ▴ 280
0
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1
reply
780
views
Nesting a covariate for differential expression design
RNA-Seq nested covariates
updated 4.1 years ago by 20 • written 4.2 years ago by ▴ 280
0
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1
reply
1.9k
views
Comment: C: chi squared assesment of gene expression and batch effect
4.2 years ago by RNAseqer ▴ 280
1
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0
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866
views
Answer: A: voomWithDreamWeights() has missing "NA" wheights for last samples
4.2 years ago by RNAseqer ▴ 280
1
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1
reply
866
views
voomWithDreamWeights() has missing "NA" wheights for last samples
voomWithDreamWeights dream variaincePartition
4.2 years ago by RNAseqer ▴ 280
3
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4
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4.1k
views
GSEA pvalue output of 0.0. Can I make it more specific?
GSEA P-value
updated 4.2 years ago by ▴ 1000 • written 4.8 years ago by ▴ 280
0
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0
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6.7k
views
Comment: C: A question regarding log2 transformation in EdgeR
4.2 years ago by RNAseqer ▴ 280
11
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4
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6.7k
views
A question regarding log2 transformation in EdgeR
EdgeR log2 differentail expression analysis
updated 4.2 years ago by ★ 8.0k • written 4.2 years ago by ▴ 280
0
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1
reply
6.7k
views
Comment: C: A question regarding log2 transformation in EdgeR
4.2 years ago by RNAseqer ▴ 280
0
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0
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735
views
package for ICC plots from a matrix?
ICC plots R
4.3 years ago by RNAseqer ▴ 280
0
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0
replies
959
views
Comment: C: Is miarma-Seq being maintained?
4.4 years ago by RNAseqer ▴ 280
133 results • Page 1 of 3
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