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1
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2
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1.6k
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junction_annotation.py: How many 'novel' splice junctions/splice events are resonably expected from human RNA,
RNA-Seq junction_annotation.py human
updated 28 days ago by ▴ 20 • written 4.6 years ago by ▴ 250
2
votes
1
reply
559
views
coef /makeContrasts very different results
makeContrasts coef2 edgeR
updated 4 months ago by ★ 6.4k • written 5 months ago by ▴ 250
0
votes
1
reply
742
views
mirge3.0 custom miRNA db option
database custom miRNA mirge3.0
updated 7 months ago by • 0 • written 2.3 years ago by ▴ 250
5
votes
2
replies
1.5k
views
WGCNA: outputting multiple hubgenes from a module
WGCNA HubGenes
updated 14 months ago by ▴ 30 • written 3.3 years ago by ▴ 250
0
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0
replies
263
views
custom sizing question in ggseqlogo. sequence logo creation
logo sequence R ggseqlogo
16 months ago by RNAseqer ▴ 250
0
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0
replies
274
views
geo database for integrated miRNA-mRNA sequencing of neural cell
mir-seq mrna-seq
19 months ago by RNAseqer ▴ 250
0
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0
replies
230
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How to get a screeplot of surrogate variables from sva()
screeplot sva svaseq
19 months ago by RNAseqer ▴ 250
0
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0
replies
490
views
WGCNA, module preservation over permutations, how to?
module WGCNA preservation
21 months ago by RNAseqer ▴ 250
0
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0
replies
9.0k
views
Comment: Comment: convert from plink format into 012 format
22 months ago by RNAseqer ▴ 250
0
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0
replies
301
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what regression model does step() in R use
lm function R model stepwise
22 months ago by RNAseqer ▴ 250
0
votes
1
reply
695
views
How to extract beta coefficients from edgeR output
rnaseq beta coefficient r edger
updated 23 months ago by ★ 6.4k • written 23 months ago by ▴ 250
2
votes
1
reply
468
views
EdgeR exclude 0 count subjects for each gene
count edgeR R
updated 23 months ago by ★ 6.4k • written 23 months ago by ▴ 250
0
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0
replies
387
views
How do you convert vcf file to a genotype file useable by eigenstrat
conversion vcf format eigenstrat
23 months ago by RNAseqer ▴ 250
0
votes
0
replies
476
views
accessing the r-peer docker container.
docker peer r
23 months ago by RNAseqer ▴ 250
0
votes
1
reply
509
views
Analysis of a SNPs moderating effect on disease
effect SNP moderating
updated 24 months ago by 5.5k • written 24 months ago by ▴ 250
0
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0
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770
views
Comment: Comment: Most well regarded piRNA detection pipeline/program
24 months ago by RNAseqer ▴ 250
5
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2
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770
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Most well regarded piRNA detection pipeline/program
expression piRNA differential smallRNAseq detection
24 months ago by RNAseqer ▴ 250
0
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0
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341
views
how to identiify real isomers in mirge3.0's output files.
isomirs mirge3.0
2.0 years ago by RNAseqer ▴ 250
0
votes
0
replies
712
views
REditools2 (HPC-reditools) de-novo editing prediction from RNAseq?
editing reditools2 prediction RNAseq
2.1 years ago by RNAseqer ▴ 250
0
votes
1
reply
723
views
Comment: Comment: what is the best R package/function to perform an Equality of variance F-test on
2.2 years ago by RNAseqer ▴ 250
0
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3
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723
views
what is the best R package/function to perform an Equality of variance F-test on TMM log2 gene expression values
gene-expression F-test equality-of-variance
updated 2.2 years ago by 77k • written 2.2 years ago by ▴ 250
0
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0
replies
402
views
Can you get individual sample counts from Spar (Small RNA-seq portal for analysis of sequencing experiments)
Differential RNAseq SPAR Expression
2.4 years ago by RNAseqer ▴ 250
0
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0
replies
413
views
getting residuals from dream
dream limma residuals
2.4 years ago by RNAseqer ▴ 250
0
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0
replies
436
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limma dream giving error message 'subscript out of bounds'
error Dream R
2.5 years ago by RNAseqer ▴ 250
0
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0
replies
707
views
alternative package for littlesMCAR() or mcar_test()
littlesMCAR MCAR missingdata
2.5 years ago by RNAseqer ▴ 250
5
votes
2
replies
719
views
Heirarchal regression for model comparison, RNA-seq
R RNA-seq heirarchalregression
updated 2.5 years ago by 77k • written 2.5 years ago by ▴ 250
0
votes
0
replies
1.1k
views
Comment: Comment: chi squared assesment of gene expression and batch effect
2.5 years ago by RNAseqer ▴ 250
1
vote
5
replies
1.1k
views
chi squared assesment of gene expression and batch effect
RNA-Seq r chi squared
2.5 years ago by RNAseqer ▴ 250
0
votes
1
reply
692
views
model matrix error message 'unequal columns/rows' when using a conditional variable
rna-seq categorical variables edger
updated 2.5 years ago by ★ 6.4k • written 2.6 years ago by ▴ 250
0
votes
1
reply
508
views
Nesting a covariate for differential expression design
RNA-Seq nested covariates
updated 2.5 years ago by 20 • written 2.6 years ago by ▴ 250
0
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1
reply
1.1k
views
Comment: C: chi squared assesment of gene expression and batch effect
2.5 years ago by RNAseqer ▴ 250
1
vote
1
reply
554
views
voomWithDreamWeights() has missing "NA" wheights for last samples
voomWithDreamWeights dream variaincePartition
2.6 years ago by RNAseqer ▴ 250
1
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0
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554
views
Answer: A: voomWithDreamWeights() has missing "NA" wheights for last samples
2.6 years ago by RNAseqer ▴ 250
3
votes
4
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2.7k
views
GSEA pvalue output of 0.0. Can I make it more specific?
GSEA P-value
updated 2.6 years ago by ▴ 860 • written 3.2 years ago by ▴ 250
0
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0
replies
3.7k
views
Comment: C: A question regarding log2 transformation in EdgeR
2.6 years ago by RNAseqer ▴ 250
8
votes
4
replies
3.7k
views
A question regarding log2 transformation in EdgeR
EdgeR log2 differentail expression analysis
updated 2.6 years ago by ★ 6.4k • written 2.6 years ago by ▴ 250
0
votes
1
reply
3.7k
views
Comment: C: A question regarding log2 transformation in EdgeR
2.6 years ago by RNAseqer ▴ 250
0
votes
0
replies
496
views
package for ICC plots from a matrix?
ICC plots R
2.7 years ago by RNAseqer ▴ 250
0
votes
0
replies
659
views
Comment: C: Is miarma-Seq being maintained?
2.8 years ago by RNAseqer ▴ 250
2
votes
4
replies
659
views
Is miarma-Seq being maintained?
miarma-Seq miRNA RNA-Seq
2.8 years ago by RNAseqer ▴ 250
0
votes
0
replies
484
views
best practices/ pipeline for miRNA sequencing QC
RNA-Seq miRNA-seq QC
2.9 years ago by RNAseqer ▴ 250
0
votes
1
reply
912
views
Is there a good reference matrix for miRNA array deconvolution?
miRNA microarray deconvolution
updated 3.2 years ago by • 0 • written 3.4 years ago by ▴ 250
0
votes
1
reply
560
views
constructing a reference matrix from affy 2.0 chip for a 4.0 chip.
affy miRNA Affymetrix Multispecies miRNA-1 Array
3.4 years ago by RNAseqer ▴ 250
1
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0
replies
1.7k
views
Comment: C: affy Transcriptome Analysis Console (TAC), export expression matrix?
3.4 years ago by RNAseqer ▴ 250
3
votes
2
replies
1.7k
views
affy Transcriptome Analysis Console (TAC), export expression matrix?
affy TAC expression matrix
3.4 years ago by RNAseqer ▴ 250
1
vote
2
replies
630
views
Small number of genes, drop in sft fit curve at higher threshold powers. why?
sft wgcna scale-free
updated 3.5 years ago by 86k • written 3.5 years ago by ▴ 250
0
votes
0
replies
953
views
Comment: C: Excel: using quartiles & averageifs to combine probe values without outliers
3.6 years ago by RNAseqer ▴ 250
2
votes
1
reply
953
views
Answer: C: Excel: using quartiles & averageifs to combine probe values without outliers
3.6 years ago by RNAseqer ▴ 250
3
votes
3
replies
953
views
Excel: using quartiles & averageifs to combine probe values without outliers
excel outliers quartile averageifs matching
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 250
1
vote
0
replies
1.4k
views
Comment: C: A good place to get immune cell deconvolution reference datasets?
3.7 years ago by RNAseqer ▴ 250
122 results • Page 1 of 3
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