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1
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0
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348
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Comment: Comment: samtools version 1.17 having difficulty parsing a filtering command. advice?
4 days ago by RNAseqer ▴ 280
1
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3
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348
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samtools version 1.17 having difficulty parsing a filtering command. advice?
samtools cell rnaseq single
updated 5 days ago by ▴ 340 • written 6 days ago by ▴ 280
0
votes
3
replies
461
views
Biomart issue, why so few 3'utrs?
utr biomart
updated 6 months ago by 147k • written 6 months ago by ▴ 280
0
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0
replies
365
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Comment: Comment: mirbase gff and mature fastas for custom STAR index genome?
8 months ago by RNAseqer ▴ 280
0
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1
reply
315
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sorted bam file generated from gff transcript fastas, how to get counts with HTseq?
htseq bam
updated 8 months ago by 44k • written 8 months ago by ▴ 280
0
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1
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365
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mirbase gff and mature fastas for custom STAR index genome?
mirbase indexing star genome
8 months ago by RNAseqer ▴ 280
0
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2
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1.1k
views
Comment: Comment: Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not pres
12 months ago by RNAseqer ▴ 280
3
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4
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1.1k
views
Plotting a pvalue threshold for an FDR corrected pvalue <.05 when thats not present in R
FDR volcano plotting R plot
updated 12 months ago by ★ 1.6k • written 12 months ago by ▴ 280
1
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2
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2.1k
views
junction_annotation.py: How many 'novel' splice junctions/splice events are resonably expected from human RNA,
RNA-Seq junction_annotation.py human
updated 15 months ago by ▴ 20 • written 5.8 years ago by ▴ 280
2
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1
reply
1.1k
views
coef /makeContrasts very different results
makeContrasts coef2 edgeR
updated 18 months ago by ★ 7.7k • written 19 months ago by ▴ 280
0
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1
reply
1.0k
views
mirge3.0 custom miRNA db option
database custom miRNA mirge3.0
updated 21 months ago by • 0 • written 3.5 years ago by ▴ 280
6
votes
2
replies
2.0k
views
WGCNA: outputting multiple hubgenes from a module
WGCNA HubGenes
updated 2.4 years ago by ▴ 30 • written 4.5 years ago by ▴ 280
0
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0
replies
406
views
custom sizing question in ggseqlogo. sequence logo creation
logo sequence R ggseqlogo
2.5 years ago by RNAseqer ▴ 280
0
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0
replies
410
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geo database for integrated miRNA-mRNA sequencing of neural cell
mir-seq mrna-seq
2.7 years ago by RNAseqer ▴ 280
0
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0
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377
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How to get a screeplot of surrogate variables from sva()
screeplot sva svaseq
2.7 years ago by RNAseqer ▴ 280
0
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0
replies
711
views
WGCNA, module preservation over permutations, how to?
module WGCNA preservation
3.0 years ago by RNAseqer ▴ 280
0
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0
replies
10k
views
Comment: Comment: convert from plink format into 012 format
3.0 years ago by RNAseqer ▴ 280
0
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0
replies
481
views
what regression model does step() in R use
lm function R model stepwise
3.0 years ago by RNAseqer ▴ 280
0
votes
1
reply
966
views
How to extract beta coefficients from edgeR output
rnaseq beta coefficient r edger
updated 3.1 years ago by ★ 7.7k • written 3.1 years ago by ▴ 280
2
votes
1
reply
676
views
EdgeR exclude 0 count subjects for each gene
count edgeR R
updated 3.1 years ago by ★ 7.7k • written 3.1 years ago by ▴ 280
0
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0
replies
538
views
How do you convert vcf file to a genotype file useable by eigenstrat
conversion vcf format eigenstrat
3.1 years ago by RNAseqer ▴ 280
0
votes
0
replies
631
views
accessing the r-peer docker container.
docker peer r
3.1 years ago by RNAseqer ▴ 280
0
votes
1
reply
716
views
Analysis of a SNPs moderating effect on disease
SNP moderating-effect
updated 3 months ago by 44k • written 3.2 years ago by ▴ 280
0
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0
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1.1k
views
Comment: Comment: Most well regarded piRNA detection pipeline/program
3.2 years ago by RNAseqer ▴ 280
5
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2
replies
1.1k
views
Most well regarded piRNA detection pipeline/program
expression piRNA differential smallRNAseq detection
3.2 years ago by RNAseqer ▴ 280
0
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0
replies
515
views
how to identiify real isomers in mirge3.0's output files.
isomirs mirge3.0
3.2 years ago by RNAseqer ▴ 280
0
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0
replies
1.0k
views
REditools2 (HPC-reditools) de-novo editing prediction from RNAseq?
editing reditools2 prediction RNAseq
3.3 years ago by RNAseqer ▴ 280
0
votes
1
reply
978
views
Comment: Comment: what is the best R package/function to perform an Equality of variance F-test on
3.4 years ago by RNAseqer ▴ 280
0
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3
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978
views
what is the best R package/function to perform an Equality of variance F-test on TMM log2 gene expression values
gene-expression F-test equality-of-variance
updated 3.4 years ago by 85k • written 3.4 years ago by ▴ 280
0
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0
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520
views
Can you get individual sample counts from Spar (Small RNA-seq portal for analysis of sequencing experiments)
Differential RNAseq SPAR Expression
3.5 years ago by RNAseqer ▴ 280
0
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0
replies
583
views
getting residuals from dream
dream limma residuals
3.6 years ago by RNAseqer ▴ 280
0
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0
replies
578
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limma dream giving error message 'subscript out of bounds'
error Dream R
3.7 years ago by RNAseqer ▴ 280
0
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0
replies
923
views
alternative package for littlesMCAR() or mcar_test()
littlesMCAR MCAR missingdata
3.7 years ago by RNAseqer ▴ 280
5
votes
2
replies
945
views
Heirarchal regression for model comparison, RNA-seq
R RNA-seq heirarchalregression
updated 3.7 years ago by 85k • written 3.7 years ago by ▴ 280
0
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0
replies
1.6k
views
Comment: Comment: chi squared assesment of gene expression and batch effect
3.7 years ago by RNAseqer ▴ 280
1
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5
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1.6k
views
chi squared assesment of gene expression and batch effect
RNA-Seq r chi squared
3.7 years ago by RNAseqer ▴ 280
0
votes
1
reply
958
views
model matrix error message 'unequal columns/rows' when using a conditional variable
rna-seq categorical variables edger
updated 3.7 years ago by ★ 7.7k • written 3.7 years ago by ▴ 280
0
votes
1
reply
696
views
Nesting a covariate for differential expression design
RNA-Seq nested covariates
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 280
0
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1
reply
1.6k
views
Comment: C: chi squared assesment of gene expression and batch effect
3.7 years ago by RNAseqer ▴ 280
1
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0
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780
views
Answer: A: voomWithDreamWeights() has missing "NA" wheights for last samples
3.8 years ago by RNAseqer ▴ 280
1
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1
reply
780
views
voomWithDreamWeights() has missing "NA" wheights for last samples
voomWithDreamWeights dream variaincePartition
3.8 years ago by RNAseqer ▴ 280
3
votes
4
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3.7k
views
GSEA pvalue output of 0.0. Can I make it more specific?
GSEA P-value
updated 3.8 years ago by ▴ 1000 • written 4.3 years ago by ▴ 280
0
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0
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5.9k
views
Comment: C: A question regarding log2 transformation in EdgeR
3.8 years ago by RNAseqer ▴ 280
10
votes
4
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5.9k
views
A question regarding log2 transformation in EdgeR
EdgeR log2 differentail expression analysis
updated 3.8 years ago by ★ 7.7k • written 3.8 years ago by ▴ 280
0
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1
reply
5.9k
views
Comment: C: A question regarding log2 transformation in EdgeR
3.8 years ago by RNAseqer ▴ 280
0
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0
replies
655
views
package for ICC plots from a matrix?
ICC plots R
3.8 years ago by RNAseqer ▴ 280
0
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0
replies
873
views
Comment: C: Is miarma-Seq being maintained?
4.0 years ago by RNAseqer ▴ 280
2
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4
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873
views
Is miarma-Seq being maintained?
miarma-Seq miRNA RNA-Seq
4.0 years ago by RNAseqer ▴ 280
0
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0
replies
632
views
best practices/ pipeline for miRNA sequencing QC
RNA-Seq miRNA-seq QC
4.1 years ago by RNAseqer ▴ 280
0
votes
1
reply
1.1k
views
Is there a good reference matrix for miRNA array deconvolution?
miRNA microarray deconvolution
updated 4.3 years ago by • 0 • written 4.6 years ago by ▴ 280
130 results • Page 1 of 3
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