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How to remove variants with 3+ alleles present Plink1.9
HaplotypeCaller GATK Plink1.9 vcftools
updated 18 months ago by ▴ 10 • written 3.6 years ago by ▴ 20
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3.5k
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Query regarding Intervals and interval lists (-L) for Target Enrichment Sequencing GATK HaplotypeCaller
Agilent Interval_list HaplotypeCaller target_enrichment_list GATK
3.6 years ago by ramshahaya ▴ 20
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1.1k
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Comment: Comment: identification of ROH using plink
3.6 years ago by ramshahaya ▴ 20
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676
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Query reagrding Plink merging
vcf Plink1.9 GATK bcftools
updated 2.3 years ago by 45k • written 3.6 years ago by ▴ 20
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1.6k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
3.6 years ago by ramshahaya ▴ 20
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4.1k
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Comment: Comment: How to remove variants with 3+ alleles present Plink1.9
updated 3.6 years ago by 12k • written 3.6 years ago by ▴ 20
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1.6k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
3.6 years ago by ramshahaya ▴ 20
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4
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1.6k
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How to get information (Count) of Unique Mapped Reads to the Genome?
samtools BWA
3.6 years ago by ramshahaya ▴ 20
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690
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Understand Bedtools coverage output
Bedtools coverage
updated 2.3 years ago by 45k • written 3.6 years ago by ▴ 20
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2.6k
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Comment: Comment: Haplotype Caller GATK Query
3.6 years ago by ramshahaya ▴ 20
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2.6k
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Comment: Comment: Haplotype Caller GATK Query
3.6 years ago by ramshahaya ▴ 20
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1
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2.6k
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Comment: Comment: Haplotype Caller GATK Query
3.6 years ago by ramshahaya ▴ 20
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1.4k
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Comment: Comment: targeted resequencing data analysis
3.6 years ago by ramshahaya ▴ 20
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2
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2.6k
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Comment: Comment: Haplotype Caller GATK Query
updated 3.6 years ago by 166k • written 3.6 years ago by ▴ 20
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9
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2.6k
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Haplotype Caller GATK Query
Sequencing enrichment Target GATK-Haplotype-Caller
3.6 years ago by ramshahaya ▴ 20
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1.6k
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Comment: Comment: SnpEff Query
3.6 years ago by ramshahaya ▴ 20
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1.6k
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Comment: Comment: SnpEff Query
3.7 years ago by ramshahaya ▴ 20
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4
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1.6k
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SnpEff Query
snpeff GATK annotation
3.6 years ago by ramshahaya ▴ 20
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0
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5.1k
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Answer: A: Picard - MergeBamAlignment: Reads remaining on alignment iterator
4.8 years ago by ramshahaya ▴ 20
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