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Query regarding Intervals and interval lists (-L) for Target Enrichment Sequencing GATK HaplotypeCaller
Agilent Interval_list HaplotypeCaller target_enrichment_list GATK
9 weeks ago by ramshahaya ▴ 10
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336
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Comment: Comment: identification of ROH using plink
10 weeks ago by ramshahaya ▴ 10
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140
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Query reagrding Plink merging
vcf bcftools Plink1.9 GATK
10 weeks ago by ramshahaya ▴ 10
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365
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
3 months ago by ramshahaya ▴ 10
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2
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314
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How to remove variants with 3+ alleles present Plink1.9
vcftools Plink1.9 Haplotype Caller GATK
updated 3 months ago by 11k • written 3 months ago by ▴ 10
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314
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Comment: Comment: How to remove variants with 3+ alleles present Plink1.9
updated 3 months ago by 11k • written 3 months ago by ▴ 10
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1
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365
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
3 months ago by ramshahaya ▴ 10
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4
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365
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How to get information (Count) of Unique Mapped Reads to the Genome?
samtools BWA
3 months ago by ramshahaya ▴ 10
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173
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Understand Bedtools coverage output
coverage Bedtools
updated 3 months ago by 8.1k • written 3 months ago by ▴ 10
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629
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Comment: Comment: Haplotype Caller GATK Query
3 months ago by ramshahaya ▴ 10
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629
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Comment: Comment: Haplotype Caller GATK Query
3 months ago by ramshahaya ▴ 10
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1
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629
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Comment: Comment: Haplotype Caller GATK Query
3 months ago by ramshahaya ▴ 10
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764
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Comment: Comment: targeted resequencing data analysis
3 months ago by ramshahaya ▴ 10
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2
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629
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Comment: Comment: Haplotype Caller GATK Query
updated 3 months ago by 145k • written 3 months ago by ▴ 10
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9
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629
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Haplotype Caller GATK Query
Sequencing enrichment Target GATK-Haplotype-Caller
3 months ago by ramshahaya ▴ 10
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419
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Comment: Comment: SnpEff Query
3 months ago by ramshahaya ▴ 10
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1
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419
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Comment: Comment: SnpEff Query
3 months ago by ramshahaya ▴ 10
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4
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419
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SnpEff Query
snpeff GATK annotation
3 months ago by ramshahaya ▴ 10
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1.7k
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Answer: A: Picard - MergeBamAlignment: Reads remaining on alignment iterator
17 months ago by ramshahaya ▴ 10
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