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How to remove variants with 3+ alleles present Plink1.9
HaplotypeCaller GATK Plink1.9 vcftools
updated 20 months ago by ▴ 10 • written 3.8 years ago by ▴ 20
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3.6k
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Query regarding Intervals and interval lists (-L) for Target Enrichment Sequencing GATK HaplotypeCaller
Agilent Interval_list HaplotypeCaller target_enrichment_list GATK
3.7 years ago by ramshahaya ▴ 20
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1.2k
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Comment: Comment: identification of ROH using plink
3.7 years ago by ramshahaya ▴ 20
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723
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Query reagrding Plink merging
vcf Plink1.9 GATK bcftools
updated 2.4 years ago by 45k • written 3.7 years ago by ▴ 20
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1.7k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
3.8 years ago by ramshahaya ▴ 20
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4.3k
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Comment: Comment: How to remove variants with 3+ alleles present Plink1.9
updated 3.8 years ago by 12k • written 3.8 years ago by ▴ 20
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1.7k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
3.8 years ago by ramshahaya ▴ 20
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4
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1.7k
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How to get information (Count) of Unique Mapped Reads to the Genome?
samtools BWA
3.8 years ago by ramshahaya ▴ 20
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0
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725
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Understand Bedtools coverage output
Bedtools coverage
updated 2.4 years ago by 45k • written 3.8 years ago by ▴ 20
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2.8k
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Comment: Comment: Haplotype Caller GATK Query
3.8 years ago by ramshahaya ▴ 20
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2.8k
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Comment: Comment: Haplotype Caller GATK Query
3.8 years ago by ramshahaya ▴ 20
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1
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2.8k
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Comment: Comment: Haplotype Caller GATK Query
3.8 years ago by ramshahaya ▴ 20
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1.5k
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Comment: Comment: targeted resequencing data analysis
3.8 years ago by ramshahaya ▴ 20
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2
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2.8k
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Comment: Comment: Haplotype Caller GATK Query
updated 3.8 years ago by 166k • written 3.8 years ago by ▴ 20
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9
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2.8k
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Haplotype Caller GATK Query
Sequencing enrichment Target GATK-Haplotype-Caller
3.8 years ago by ramshahaya ▴ 20
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0
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1.6k
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Comment: Comment: SnpEff Query
3.8 years ago by ramshahaya ▴ 20
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1.6k
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Comment: Comment: SnpEff Query
3.8 years ago by ramshahaya ▴ 20
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4
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1.6k
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SnpEff Query
snpeff GATK annotation
3.8 years ago by ramshahaya ▴ 20
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0
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5.5k
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Answer: A: Picard - MergeBamAlignment: Reads remaining on alignment iterator
5.0 years ago by ramshahaya ▴ 20
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