Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
3.6k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
2.4 years ago by srhic ▴ 70
0
votes
1
reply
3.6k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
2.4 years ago by srhic ▴ 70
0
votes
0
replies
3.6k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
2.4 years ago by srhic ▴ 70
1
vote
8
replies
3.6k
views
Typical percentage of multimapping reads in human rna-seq?
RNA-seq alignment Bowtie2 STAR
updated 16 months ago by ★ 2.1k • written 2.4 years ago by ▴ 70
0
votes
0
replies
5.0k
views
Comment: Comment: Converting LogCPM to raw counts for DESEQ2
4.4 years ago by srhic ▴ 70
5
votes
7
replies
5.0k
views
Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 21 months ago by ★ 8.5k • written 4.4 years ago by ▴ 70
0
votes
1
reply
5.0k
views
Comment: Comment: Converting LogCPM to raw counts for DESEQ2
4.4 years ago by srhic ▴ 70
0
votes
1
reply
1.9k
views
Comment: Comment: DeSeq2 analysis - very low variability among replicates
4.6 years ago by srhic ▴ 70
0
votes
1
reply
1.9k
views
Comment: Comment: DeSeq2 analysis - very low variability among replicates
4.6 years ago by srhic ▴ 70
1
vote
5
replies
1.9k
views
DeSeq2 analysis - very low variability among replicates
edgeR deseq2 rnaseq
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 70
0
votes
2
replies
3.9k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.6 years ago by srhic ▴ 70
0
votes
1
reply
3.9k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.6 years ago by srhic ▴ 70
0
votes
0
replies
3.9k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.6 years ago by srhic ▴ 70
7
votes
9
replies
3.9k
views
Choosing a single consensus promoter/transcript for each gene (Mouse)
annotation ucsc general
updated 4.6 years ago by 154k • written 4.6 years ago by ▴ 70
0
votes
0
replies
3.9k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene
4.6 years ago by srhic ▴ 70
2
votes
2
replies
3.1k
views
Confused about TSS coordinates
ChIP-Seq
updated 4.6 years ago by ▴ 20 • written 6.3 years ago by ▴ 70
1
vote
0
replies
1.7k
views
Comment: C: Merging chip-seq samples sequenced in two different runs
4.7 years ago by srhic ▴ 70
4
votes
2
replies
1.7k
views
Merging chip-seq samples sequenced in two different runs
ChIP-Seq RNA-Seq
updated 4.7 years ago by 9.0k • written 4.7 years ago by ▴ 70
0
votes
1
reply
2.1k
views
Comment: C: Non-uniform p-value histogram in differential analysis
4.8 years ago by srhic ▴ 70
0
votes
0
replies
2.1k
views
Comment: C: Non-uniform p-value histogram in differential analysis
4.8 years ago by srhic ▴ 70
0
votes
5
replies
2.1k
views
Non-uniform p-value histogram in differential analysis
ChIP-Seq RNA-Seq
updated 4.8 years ago by 13k • written 4.8 years ago by ▴ 70
0
votes
2
replies
1.0k
views
Chip-seq data with low enrichment
ChIP-Seq
4.8 years ago by srhic ▴ 70
0
votes
0
replies
3.2k
views
Comment: C: Tn5 bias in atac-seq
5.1 years ago by srhic ▴ 70
0
votes
1
reply
3.2k
views
Comment: C: Tn5 bias in atac-seq
5.1 years ago by srhic ▴ 70
3
votes
7
replies
3.2k
views
Tn5 bias in atac-seq
atac-seq tn5 next-gen
updated 4.4 years ago by ▴ 30 • written 5.1 years ago by ▴ 70
0
votes
1
reply
3.4k
views
Comment: C: ATAC-Seq: Filter bams for differential analysis or not
5.3 years ago by srhic ▴ 70
1
vote
6
replies
3.4k
views
ATAC-Seq: Filter bams for differential analysis or not
atac-seq
updated 4.6 years ago by ★ 3.1k • written 5.3 years ago by ▴ 70
0
votes
0
replies
2.1k
views
Comment: C: Chip-Seq normalization between conditions
5.4 years ago by srhic ▴ 70
0
votes
1
reply
2.1k
views
Comment: C: Chip-Seq normalization between conditions
5.4 years ago by srhic ▴ 70
0
votes
4
replies
2.1k
views
Chip-Seq normalization between conditions
deeptools ChIP-Seq
5.4 years ago by srhic ▴ 70
0
votes
0
replies
1.0k
views
Any tools for nucleosome phasing analysis of ATAC-Seq data?
atac-seq next-gen nucleosome
5.5 years ago by srhic ▴ 70
0
votes
1
reply
1.9k
views
Comment: C: Treated technical replicates as biological replicates by mistake
5.5 years ago by srhic ▴ 70
0
votes
0
replies
1.9k
views
Comment: C: Treated technical replicates as biological replicates by mistake
5.5 years ago by srhic ▴ 70
0
votes
5
replies
1.9k
views
Treated technical replicates as biological replicates by mistake
RNA-Seq ChIP-Seq
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 70
0
votes
1
reply
12k
views
Comment: C: Average bigwig files (not sum)
5.6 years ago by srhic ▴ 70
9
votes
10
replies
12k
views
Average bigwig files (not sum)
ChIP-Seq bigwig
updated 2.5 years ago by ▴ 40 • written 5.6 years ago by ▴ 70
0
votes
1
reply
4.7k
views
Comment: C: Chip-Seq input normalization with deeptools
5.6 years ago by srhic ▴ 70
0
votes
0
replies
4.7k
views
Comment: C: Chip-Seq input normalization with deeptools
5.6 years ago by srhic ▴ 70
3
votes
5
replies
4.7k
views
Chip-Seq input normalization with deeptools
ChIP-Seq deeptools
updated 5.6 years ago by ★ 19k • written 5.6 years ago by ▴ 70
0
votes
0
replies
2.5k
views
Comment: C: Removing outliers from bigwig files
5.7 years ago by srhic ▴ 70
0
votes
0
replies
2.5k
views
Comment: C: Removing outliers from bigwig files
5.7 years ago by srhic ▴ 70
0
votes
6
replies
2.5k
views
Removing outliers from bigwig files
ChIP-Seq deeptools next-gen
5.7 years ago by srhic ▴ 70
0
votes
1
reply
2.5k
views
Comment: A: Removing outliers from bigwig files
5.7 years ago by srhic ▴ 70
0
votes
1
reply
1.8k
views
Question about interpreting PCA values in HiC data
HiC Compartments PCA
5.8 years ago by srhic ▴ 70
0
votes
1
reply
3.3k
views
Comment: C: HOMER HiC interactions
6.0 years ago by srhic ▴ 70
0
votes
1
reply
3.3k
views
Comment: C: HOMER HiC interactions
6.0 years ago by srhic ▴ 70
1
vote
5
replies
3.3k
views
HOMER HiC interactions
HOMER HiC
6.0 years ago by srhic ▴ 70
0
votes
1
reply
2.7k
views
Comment: C: Plotting chip signal at TSSs with deeptools
6.2 years ago by srhic ▴ 70
2
votes
4
replies
2.7k
views
Plotting chip signal at TSSs with deeptools
deeptools computematrix ChIP-Seq
updated 15 months ago by ▴ 80 • written 6.2 years ago by ▴ 70
1
vote
0
replies
4.2k
views
Comment: C: Refseq TSS vs Ensemble TSS
6.2 years ago by srhic ▴ 70
61 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6