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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
10 months ago by srhic ▴ 60
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0
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1.5k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
10 months ago by srhic ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
10 months ago by srhic ▴ 60
1
vote
7
replies
1.5k
views
Typical percentage of multimapping reads in human rna-seq?
RNA-seq alignment Bowtie2 STAR
updated 10 months ago by 141k • written 10 months ago by ▴ 60
0
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0
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2.8k
views
Comment: Comment: Converting LogCPM to raw counts for DESEQ2
2.9 years ago by srhic ▴ 60
5
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7
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2.8k
views
Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 11 weeks ago by ★ 7.0k • written 2.9 years ago by ▴ 60
0
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1
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2.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
2.9 years ago by srhic ▴ 60
0
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1
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1.3k
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Comment: Comment: DeSeq2 analysis - very low variability among replicates
3.1 years ago by srhic ▴ 60
0
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1
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1.3k
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Comment: Comment: DeSeq2 analysis - very low variability among replicates
3.1 years ago by srhic ▴ 60
1
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5
replies
1.3k
views
DeSeq2 analysis - very low variability among replicates
edgeR deseq2 rnaseq
updated 3.1 years ago by 82k • written 3.1 years ago by ▴ 60
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2
replies
2.2k
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Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.1 years ago by srhic ▴ 60
0
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1
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2.2k
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Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.1 years ago by srhic ▴ 60
0
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0
replies
2.2k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.1 years ago by srhic ▴ 60
7
votes
9
replies
2.2k
views
Choosing a single consensus promoter/transcript for each gene (Mouse)
annotation ucsc general
updated 3.1 years ago by 141k • written 3.1 years ago by ▴ 60
0
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0
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2.2k
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Comment: Comment: Choosing a single consensus promoter/transcript for each gene
3.1 years ago by srhic ▴ 60
1
vote
2
replies
2.0k
views
Confused about TSS coordinates
ChIP-Seq
updated 3.1 years ago by ▴ 20 • written 4.8 years ago by ▴ 60
1
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0
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1.0k
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Comment: C: Merging chip-seq samples sequenced in two different runs
3.2 years ago by srhic ▴ 60
4
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2
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1.0k
views
Merging chip-seq samples sequenced in two different runs
ChIP-Seq RNA-Seq
updated 3.2 years ago by 8.7k • written 3.2 years ago by ▴ 60
0
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1
reply
1.3k
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Comment: C: Non-uniform p-value histogram in differential analysis
3.3 years ago by srhic ▴ 60
0
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0
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1.3k
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Comment: C: Non-uniform p-value histogram in differential analysis
3.3 years ago by srhic ▴ 60
0
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5
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1.3k
views
Non-uniform p-value histogram in differential analysis
ChIP-Seq RNA-Seq
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 60
0
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2
replies
702
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Chip-seq data with low enrichment
ChIP-Seq
3.3 years ago by srhic ▴ 60
0
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0
replies
2.2k
views
Comment: C: Tn5 bias in atac-seq
3.6 years ago by srhic ▴ 60
0
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1
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2.2k
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Comment: C: Tn5 bias in atac-seq
3.6 years ago by srhic ▴ 60
3
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7
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2.2k
views
Tn5 bias in atac-seq
atac-seq tn5 next-gen
updated 2.8 years ago by ▴ 30 • written 3.6 years ago by ▴ 60
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1
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2.2k
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Comment: C: ATAC-Seq: Filter bams for differential analysis or not
3.8 years ago by srhic ▴ 60
1
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6
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2.2k
views
ATAC-Seq: Filter bams for differential analysis or not
atac-seq
updated 3.0 years ago by ★ 2.9k • written 3.8 years ago by ▴ 60
0
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0
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1.4k
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Comment: C: Chip-Seq normalization between conditions
3.9 years ago by srhic ▴ 60
0
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1
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1.4k
views
Comment: C: Chip-Seq normalization between conditions
3.9 years ago by srhic ▴ 60
0
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4
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1.4k
views
Chip-Seq normalization between conditions
deeptools ChIP-Seq
3.9 years ago by srhic ▴ 60
0
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0
replies
795
views
Any tools for nucleosome phasing analysis of ATAC-Seq data?
atac-seq next-gen nucleosome
3.9 years ago by srhic ▴ 60
0
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1
reply
1.1k
views
Comment: C: Treated technical replicates as biological replicates by mistake
4.0 years ago by srhic ▴ 60
0
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0
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1.1k
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Comment: C: Treated technical replicates as biological replicates by mistake
4.0 years ago by srhic ▴ 60
0
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5
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1.1k
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Treated technical replicates as biological replicates by mistake
RNA-Seq ChIP-Seq
updated 4.0 years ago by 82k • written 4.0 years ago by ▴ 60
0
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1
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8.7k
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Comment: C: Average bigwig files (not sum)
4.1 years ago by srhic ▴ 60
8
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10
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8.7k
views
Average bigwig files (not sum)
ChIP-Seq bigwig
updated 11 months ago by ▴ 40 • written 4.1 years ago by ▴ 60
0
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1
reply
3.1k
views
Comment: C: Chip-Seq input normalization with deeptools
4.1 years ago by srhic ▴ 60
0
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0
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3.1k
views
Comment: C: Chip-Seq input normalization with deeptools
4.1 years ago by srhic ▴ 60
3
votes
5
replies
3.1k
views
Chip-Seq input normalization with deeptools
ChIP-Seq deeptools
updated 4.1 years ago by ★ 16k • written 4.1 years ago by ▴ 60
0
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0
replies
1.6k
views
Comment: C: Removing outliers from bigwig files
4.2 years ago by srhic ▴ 60
0
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0
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1.6k
views
Comment: C: Removing outliers from bigwig files
4.2 years ago by srhic ▴ 60
0
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6
replies
1.6k
views
Removing outliers from bigwig files
ChIP-Seq deeptools next-gen
4.2 years ago by srhic ▴ 60
0
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1
reply
1.6k
views
Comment: A: Removing outliers from bigwig files
4.2 years ago by srhic ▴ 60
0
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1
reply
1.3k
views
Question about interpreting PCA values in HiC data
HiC Compartments PCA
4.2 years ago by srhic ▴ 60
0
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1
reply
2.2k
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Comment: C: HOMER HiC interactions
4.5 years ago by srhic ▴ 60
0
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1
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2.2k
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Comment: C: HOMER HiC interactions
4.5 years ago by srhic ▴ 60
1
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5
replies
2.2k
views
HOMER HiC interactions
HOMER HiC
4.5 years ago by srhic ▴ 60
0
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1
reply
1.7k
views
Comment: C: Plotting chip signal at TSSs with deeptools
4.7 years ago by srhic ▴ 60
1
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3
replies
1.7k
views
Plotting chip signal at TSSs with deeptools
deeptools computematrix ChIP-Seq
updated 4.7 years ago by 104k • written 4.7 years ago by ▴ 60
1
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0
replies
3.0k
views
Comment: C: Refseq TSS vs Ensemble TSS
4.7 years ago by srhic ▴ 60
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