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0
votes
1
reply
2.2k
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Comment:
Comment: Typical percentage of multimapping reads in human rna-seq?
16 months ago by
srhic
▴ 60
0
votes
1
reply
2.2k
views
Comment:
Comment: Typical percentage of multimapping reads in human rna-seq?
16 months ago by
srhic
▴ 60
0
votes
0
replies
2.2k
views
Comment:
Comment: Typical percentage of multimapping reads in human rna-seq?
16 months ago by
srhic
▴ 60
1
vote
8
replies
2.2k
views
Typical percentage of multimapping reads in human rna-seq?
RNA-seq
alignment
Bowtie2
STAR
updated 4 months ago by
predeus
★ 2.1k • written 16 months ago by
srhic
▴ 60
0
votes
0
replies
3.5k
views
Comment:
Comment: Converting LogCPM to raw counts for DESEQ2
3.4 years ago by
srhic
▴ 60
5
votes
7
replies
3.5k
views
Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 9 months ago by
Gordon Smyth
★ 7.5k • written 3.4 years ago by
srhic
▴ 60
0
votes
1
reply
3.5k
views
Comment:
Comment: Converting LogCPM to raw counts for DESEQ2
3.4 years ago by
srhic
▴ 60
0
votes
1
reply
1.5k
views
Comment:
Comment: DeSeq2 analysis - very low variability among replicates
3.6 years ago by
srhic
▴ 60
0
votes
1
reply
1.5k
views
Comment:
Comment: DeSeq2 analysis - very low variability among replicates
3.6 years ago by
srhic
▴ 60
1
vote
5
replies
1.5k
views
DeSeq2 analysis - very low variability among replicates
edgeR
deseq2
rnaseq
updated 3.6 years ago by
ATpoint
85k • written 3.6 years ago by
srhic
▴ 60
0
votes
2
replies
2.6k
views
Comment:
Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.6 years ago by
srhic
▴ 60
0
votes
1
reply
2.6k
views
Comment:
Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.6 years ago by
srhic
▴ 60
0
votes
0
replies
2.6k
views
Comment:
Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
3.6 years ago by
srhic
▴ 60
7
votes
9
replies
2.6k
views
Choosing a single consensus promoter/transcript for each gene (Mouse)
annotation
ucsc
general
updated 3.6 years ago by
GenoMax
147k • written 3.6 years ago by
srhic
▴ 60
0
votes
0
replies
2.6k
views
Comment:
Comment: Choosing a single consensus promoter/transcript for each gene
3.6 years ago by
srhic
▴ 60
1
vote
2
replies
2.3k
views
Confused about TSS coordinates
ChIP-Seq
updated 3.7 years ago by
Zhenpeng Yu
▴ 20 • written 5.4 years ago by
srhic
▴ 60
1
vote
0
replies
1.2k
views
Comment:
C: Merging chip-seq samples sequenced in two different runs
3.7 years ago by
srhic
▴ 60
4
votes
2
replies
1.2k
views
Merging chip-seq samples sequenced in two different runs
ChIP-Seq
RNA-Seq
updated 3.7 years ago by
Carlo Yague
8.9k • written 3.7 years ago by
srhic
▴ 60
0
votes
1
reply
1.5k
views
Comment:
C: Non-uniform p-value histogram in differential analysis
3.8 years ago by
srhic
▴ 60
0
votes
0
replies
1.5k
views
Comment:
C: Non-uniform p-value histogram in differential analysis
3.8 years ago by
srhic
▴ 60
0
votes
5
replies
1.5k
views
Non-uniform p-value histogram in differential analysis
ChIP-Seq
RNA-Seq
updated 3.8 years ago by
rpolicastro
13k • written 3.8 years ago by
srhic
▴ 60
0
votes
2
replies
788
views
Chip-seq data with low enrichment
ChIP-Seq
3.8 years ago by
srhic
▴ 60
0
votes
0
replies
2.5k
views
Comment:
C: Tn5 bias in atac-seq
4.1 years ago by
srhic
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: Tn5 bias in atac-seq
4.1 years ago by
srhic
▴ 60
3
votes
7
replies
2.5k
views
Tn5 bias in atac-seq
atac-seq
tn5
next-gen
updated 3.4 years ago by
Hughie
▴ 30 • written 4.1 years ago by
srhic
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: ATAC-Seq: Filter bams for differential analysis or not
4.3 years ago by
srhic
▴ 60
1
vote
6
replies
2.5k
views
ATAC-Seq: Filter bams for differential analysis or not
atac-seq
updated 3.6 years ago by
Papyrus
★ 3.0k • written 4.3 years ago by
srhic
▴ 60
0
votes
0
replies
1.6k
views
Comment:
C: Chip-Seq normalization between conditions
4.4 years ago by
srhic
▴ 60
0
votes
1
reply
1.6k
views
Comment:
C: Chip-Seq normalization between conditions
4.4 years ago by
srhic
▴ 60
0
votes
4
replies
1.6k
views
Chip-Seq normalization between conditions
deeptools
ChIP-Seq
4.4 years ago by
srhic
▴ 60
0
votes
0
replies
877
views
Any tools for nucleosome phasing analysis of ATAC-Seq data?
atac-seq
next-gen
nucleosome
4.5 years ago by
srhic
▴ 60
0
votes
1
reply
1.4k
views
Comment:
C: Treated technical replicates as biological replicates by mistake
4.5 years ago by
srhic
▴ 60
0
votes
0
replies
1.4k
views
Comment:
C: Treated technical replicates as biological replicates by mistake
4.5 years ago by
srhic
▴ 60
0
votes
5
replies
1.4k
views
Treated technical replicates as biological replicates by mistake
RNA-Seq
ChIP-Seq
updated 4.5 years ago by
ATpoint
85k • written 4.5 years ago by
srhic
▴ 60
0
votes
1
reply
9.8k
views
Comment:
C: Average bigwig files (not sum)
4.6 years ago by
srhic
▴ 60
9
votes
10
replies
9.8k
views
Average bigwig files (not sum)
ChIP-Seq
bigwig
updated 18 months ago by
vanbelj
▴ 40 • written 4.6 years ago by
srhic
▴ 60
0
votes
1
reply
3.6k
views
Comment:
C: Chip-Seq input normalization with deeptools
4.7 years ago by
srhic
▴ 60
0
votes
0
replies
3.6k
views
Comment:
C: Chip-Seq input normalization with deeptools
4.7 years ago by
srhic
▴ 60
3
votes
5
replies
3.6k
views
Chip-Seq input normalization with deeptools
ChIP-Seq
deeptools
updated 4.7 years ago by
jared.andrews07
★ 18k • written 4.7 years ago by
srhic
▴ 60
0
votes
0
replies
1.9k
views
Comment:
C: Removing outliers from bigwig files
4.7 years ago by
srhic
▴ 60
0
votes
0
replies
1.9k
views
Comment:
C: Removing outliers from bigwig files
4.7 years ago by
srhic
▴ 60
0
votes
6
replies
1.9k
views
Removing outliers from bigwig files
ChIP-Seq
deeptools
next-gen
4.7 years ago by
srhic
▴ 60
0
votes
1
reply
1.9k
views
Comment:
A: Removing outliers from bigwig files
4.7 years ago by
srhic
▴ 60
0
votes
1
reply
1.5k
views
Question about interpreting PCA values in HiC data
HiC
Compartments
PCA
4.8 years ago by
srhic
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: HOMER HiC interactions
5.0 years ago by
srhic
▴ 60
0
votes
1
reply
2.5k
views
Comment:
C: HOMER HiC interactions
5.0 years ago by
srhic
▴ 60
1
vote
5
replies
2.5k
views
HOMER HiC interactions
HOMER
HiC
5.0 years ago by
srhic
▴ 60
0
votes
1
reply
2.0k
views
Comment:
C: Plotting chip signal at TSSs with deeptools
5.2 years ago by
srhic
▴ 60
2
votes
4
replies
2.0k
views
Plotting chip signal at TSSs with deeptools
deeptools
computematrix
ChIP-Seq
updated 3 months ago by
QX
▴ 60 • written 5.2 years ago by
srhic
▴ 60
1
vote
0
replies
3.4k
views
Comment:
C: Refseq TSS vs Ensemble TSS
5.2 years ago by
srhic
▴ 60
61 results • Page
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