Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
3.0k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
23 months ago by srhic ▴ 70
0
votes
1
reply
3.0k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
23 months ago by srhic ▴ 70
0
votes
0
replies
3.0k
views
Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
23 months ago by srhic ▴ 70
1
vote
8
replies
3.0k
views
Typical percentage of multimapping reads in human rna-seq?
RNA-seq alignment Bowtie2 STAR
updated 10 months ago by ★ 2.1k • written 23 months ago by ▴ 70
0
votes
0
replies
4.1k
views
Comment: Comment: Converting LogCPM to raw counts for DESEQ2
3.9 years ago by srhic ▴ 70
5
votes
7
replies
4.1k
views
Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 15 months ago by ★ 8.1k • written 3.9 years ago by ▴ 70
0
votes
1
reply
4.1k
views
Comment: Comment: Converting LogCPM to raw counts for DESEQ2
3.9 years ago by srhic ▴ 70
0
votes
1
reply
1.7k
views
Comment: Comment: DeSeq2 analysis - very low variability among replicates
4.1 years ago by srhic ▴ 70
0
votes
1
reply
1.7k
views
Comment: Comment: DeSeq2 analysis - very low variability among replicates
4.1 years ago by srhic ▴ 70
1
vote
5
replies
1.7k
views
DeSeq2 analysis - very low variability among replicates
edgeR deseq2 rnaseq
updated 4.1 years ago by 88k • written 4.1 years ago by ▴ 70
0
votes
2
replies
3.1k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.1 years ago by srhic ▴ 70
0
votes
1
reply
3.1k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.1 years ago by srhic ▴ 70
0
votes
0
replies
3.1k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.1 years ago by srhic ▴ 70
7
votes
9
replies
3.1k
views
Choosing a single consensus promoter/transcript for each gene (Mouse)
annotation ucsc general
updated 4.1 years ago by 151k • written 4.1 years ago by ▴ 70
0
votes
0
replies
3.1k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene
4.1 years ago by srhic ▴ 70
2
votes
2
replies
2.6k
views
Confused about TSS coordinates
ChIP-Seq
updated 4.2 years ago by ▴ 20 • written 5.9 years ago by ▴ 70
1
vote
0
replies
1.4k
views
Comment: C: Merging chip-seq samples sequenced in two different runs
4.2 years ago by srhic ▴ 70
4
votes
2
replies
1.4k
views
Merging chip-seq samples sequenced in two different runs
ChIP-Seq RNA-Seq
updated 4.2 years ago by 9.0k • written 4.2 years ago by ▴ 70
0
votes
1
reply
1.8k
views
Comment: C: Non-uniform p-value histogram in differential analysis
4.3 years ago by srhic ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: Non-uniform p-value histogram in differential analysis
4.3 years ago by srhic ▴ 70
0
votes
5
replies
1.8k
views
Non-uniform p-value histogram in differential analysis
ChIP-Seq RNA-Seq
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 70
0
votes
2
replies
901
views
Chip-seq data with low enrichment
ChIP-Seq
4.3 years ago by srhic ▴ 70
0
votes
0
replies
2.8k
views
Comment: C: Tn5 bias in atac-seq
4.6 years ago by srhic ▴ 70
0
votes
1
reply
2.8k
views
Comment: C: Tn5 bias in atac-seq
4.6 years ago by srhic ▴ 70
3
votes
7
replies
2.8k
views
Tn5 bias in atac-seq
atac-seq tn5 next-gen
updated 3.9 years ago by ▴ 30 • written 4.6 years ago by ▴ 70
0
votes
1
reply
2.9k
views
Comment: C: ATAC-Seq: Filter bams for differential analysis or not
4.9 years ago by srhic ▴ 70
1
vote
6
replies
2.9k
views
ATAC-Seq: Filter bams for differential analysis or not
atac-seq
updated 4.1 years ago by ★ 3.1k • written 4.9 years ago by ▴ 70
0
votes
0
replies
1.9k
views
Comment: C: Chip-Seq normalization between conditions
5.0 years ago by srhic ▴ 70
0
votes
1
reply
1.9k
views
Comment: C: Chip-Seq normalization between conditions
5.0 years ago by srhic ▴ 70
0
votes
4
replies
1.9k
views
Chip-Seq normalization between conditions
deeptools ChIP-Seq
5.0 years ago by srhic ▴ 70
0
votes
0
replies
947
views
Any tools for nucleosome phasing analysis of ATAC-Seq data?
atac-seq next-gen nucleosome
5.0 years ago by srhic ▴ 70
0
votes
1
reply
1.6k
views
Comment: C: Treated technical replicates as biological replicates by mistake
5.0 years ago by srhic ▴ 70
0
votes
0
replies
1.6k
views
Comment: C: Treated technical replicates as biological replicates by mistake
5.0 years ago by srhic ▴ 70
0
votes
5
replies
1.6k
views
Treated technical replicates as biological replicates by mistake
RNA-Seq ChIP-Seq
updated 5.0 years ago by 88k • written 5.0 years ago by ▴ 70
0
votes
1
reply
11k
views
Comment: C: Average bigwig files (not sum)
5.1 years ago by srhic ▴ 70
9
votes
10
replies
11k
views
Average bigwig files (not sum)
ChIP-Seq bigwig
updated 2.0 years ago by ▴ 40 • written 5.1 years ago by ▴ 70
0
votes
1
reply
4.1k
views
Comment: C: Chip-Seq input normalization with deeptools
5.2 years ago by srhic ▴ 70
0
votes
0
replies
4.1k
views
Comment: C: Chip-Seq input normalization with deeptools
5.2 years ago by srhic ▴ 70
3
votes
5
replies
4.1k
views
Chip-Seq input normalization with deeptools
ChIP-Seq deeptools
updated 5.2 years ago by ★ 18k • written 5.2 years ago by ▴ 70
0
votes
0
replies
2.2k
views
Comment: C: Removing outliers from bigwig files
5.2 years ago by srhic ▴ 70
0
votes
0
replies
2.2k
views
Comment: C: Removing outliers from bigwig files
5.2 years ago by srhic ▴ 70
0
votes
6
replies
2.2k
views
Removing outliers from bigwig files
ChIP-Seq deeptools next-gen
5.2 years ago by srhic ▴ 70
0
votes
1
reply
2.2k
views
Comment: A: Removing outliers from bigwig files
5.2 years ago by srhic ▴ 70
0
votes
1
reply
1.6k
views
Question about interpreting PCA values in HiC data
HiC Compartments PCA
5.3 years ago by srhic ▴ 70
0
votes
1
reply
2.9k
views
Comment: C: HOMER HiC interactions
5.5 years ago by srhic ▴ 70
0
votes
1
reply
2.9k
views
Comment: C: HOMER HiC interactions
5.5 years ago by srhic ▴ 70
1
vote
5
replies
2.9k
views
HOMER HiC interactions
HOMER HiC
5.5 years ago by srhic ▴ 70
0
votes
1
reply
2.3k
views
Comment: C: Plotting chip signal at TSSs with deeptools
5.7 years ago by srhic ▴ 70
2
votes
4
replies
2.3k
views
Plotting chip signal at TSSs with deeptools
deeptools computematrix ChIP-Seq
updated 9 months ago by ▴ 70 • written 5.7 years ago by ▴ 70
1
vote
0
replies
3.8k
views
Comment: C: Refseq TSS vs Ensemble TSS
5.7 years ago by srhic ▴ 70
61 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6