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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
2.2 years ago by srhic ▴ 70
0
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1
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3.4k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
2.2 years ago by srhic ▴ 70
0
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0
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3.4k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
2.2 years ago by srhic ▴ 70
1
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8
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3.4k
views
Typical percentage of multimapping reads in human rna-seq?
RNA-seq alignment Bowtie2 STAR
updated 14 months ago by ★ 2.1k • written 2.2 years ago by ▴ 70
0
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0
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4.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
4.3 years ago by srhic ▴ 70
5
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7
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4.8k
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Converting LogCPM to raw counts for DESEQ2
rna-seq
updated 19 months ago by ★ 8.3k • written 4.3 years ago by ▴ 70
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1
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4.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
4.3 years ago by srhic ▴ 70
0
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1
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1.8k
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Comment: Comment: DeSeq2 analysis - very low variability among replicates
4.5 years ago by srhic ▴ 70
0
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1
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1.8k
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Comment: Comment: DeSeq2 analysis - very low variability among replicates
4.5 years ago by srhic ▴ 70
1
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5
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1.8k
views
DeSeq2 analysis - very low variability among replicates
edgeR deseq2 rnaseq
updated 4.5 years ago by 89k • written 4.5 years ago by ▴ 70
0
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2
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3.6k
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Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.5 years ago by srhic ▴ 70
0
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1
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3.6k
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Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.5 years ago by srhic ▴ 70
0
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0
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3.6k
views
Comment: Comment: Choosing a single consensus promoter/transcript for each gene (Mouse)
4.5 years ago by srhic ▴ 70
7
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9
replies
3.6k
views
Choosing a single consensus promoter/transcript for each gene (Mouse)
annotation ucsc general
updated 4.5 years ago by 153k • written 4.5 years ago by ▴ 70
0
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0
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3.6k
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Comment: Comment: Choosing a single consensus promoter/transcript for each gene
4.5 years ago by srhic ▴ 70
2
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2
replies
2.9k
views
Confused about TSS coordinates
ChIP-Seq
updated 4.5 years ago by ▴ 20 • written 6.2 years ago by ▴ 70
1
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0
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1.6k
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Comment: C: Merging chip-seq samples sequenced in two different runs
4.6 years ago by srhic ▴ 70
4
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2
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1.6k
views
Merging chip-seq samples sequenced in two different runs
ChIP-Seq RNA-Seq
updated 4.6 years ago by 9.0k • written 4.6 years ago by ▴ 70
0
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1
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2.0k
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Comment: C: Non-uniform p-value histogram in differential analysis
4.7 years ago by srhic ▴ 70
0
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0
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2.0k
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Comment: C: Non-uniform p-value histogram in differential analysis
4.7 years ago by srhic ▴ 70
0
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5
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2.0k
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Non-uniform p-value histogram in differential analysis
ChIP-Seq RNA-Seq
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 70
0
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2
replies
996
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Chip-seq data with low enrichment
ChIP-Seq
4.7 years ago by srhic ▴ 70
0
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0
replies
3.1k
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Comment: C: Tn5 bias in atac-seq
5.0 years ago by srhic ▴ 70
0
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1
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3.1k
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Comment: C: Tn5 bias in atac-seq
5.0 years ago by srhic ▴ 70
3
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7
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3.1k
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Tn5 bias in atac-seq
atac-seq tn5 next-gen
updated 4.3 years ago by ▴ 30 • written 5.0 years ago by ▴ 70
0
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1
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3.2k
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Comment: C: ATAC-Seq: Filter bams for differential analysis or not
5.2 years ago by srhic ▴ 70
1
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6
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3.2k
views
ATAC-Seq: Filter bams for differential analysis or not
atac-seq
updated 4.5 years ago by ★ 3.1k • written 5.2 years ago by ▴ 70
0
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0
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2.0k
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Comment: C: Chip-Seq normalization between conditions
5.3 years ago by srhic ▴ 70
0
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1
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2.0k
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Comment: C: Chip-Seq normalization between conditions
5.3 years ago by srhic ▴ 70
0
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4
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2.0k
views
Chip-Seq normalization between conditions
deeptools ChIP-Seq
5.3 years ago by srhic ▴ 70
0
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0
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1.0k
views
Any tools for nucleosome phasing analysis of ATAC-Seq data?
atac-seq next-gen nucleosome
5.4 years ago by srhic ▴ 70
0
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1
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1.9k
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Comment: C: Treated technical replicates as biological replicates by mistake
5.4 years ago by srhic ▴ 70
0
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0
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1.9k
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Comment: C: Treated technical replicates as biological replicates by mistake
5.4 years ago by srhic ▴ 70
0
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5
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1.9k
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Treated technical replicates as biological replicates by mistake
RNA-Seq ChIP-Seq
updated 5.4 years ago by 89k • written 5.4 years ago by ▴ 70
0
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1
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12k
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Comment: C: Average bigwig files (not sum)
5.5 years ago by srhic ▴ 70
9
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10
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12k
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Average bigwig files (not sum)
ChIP-Seq bigwig
updated 2.4 years ago by ▴ 40 • written 5.5 years ago by ▴ 70
0
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1
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4.6k
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Comment: C: Chip-Seq input normalization with deeptools
5.5 years ago by srhic ▴ 70
0
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0
replies
4.6k
views
Comment: C: Chip-Seq input normalization with deeptools
5.5 years ago by srhic ▴ 70
3
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5
replies
4.6k
views
Chip-Seq input normalization with deeptools
ChIP-Seq deeptools
updated 5.5 years ago by ★ 19k • written 5.5 years ago by ▴ 70
0
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0
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2.4k
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Comment: C: Removing outliers from bigwig files
5.6 years ago by srhic ▴ 70
0
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0
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2.4k
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Comment: C: Removing outliers from bigwig files
5.6 years ago by srhic ▴ 70
0
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1
reply
2.4k
views
Comment: A: Removing outliers from bigwig files
5.6 years ago by srhic ▴ 70
0
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6
replies
2.4k
views
Removing outliers from bigwig files
ChIP-Seq deeptools next-gen
5.6 years ago by srhic ▴ 70
0
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1
reply
1.7k
views
Question about interpreting PCA values in HiC data
HiC Compartments PCA
5.6 years ago by srhic ▴ 70
0
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1
reply
3.2k
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Comment: C: HOMER HiC interactions
5.9 years ago by srhic ▴ 70
0
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1
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3.2k
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Comment: C: HOMER HiC interactions
5.9 years ago by srhic ▴ 70
1
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5
replies
3.2k
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HOMER HiC interactions
HOMER HiC
5.9 years ago by srhic ▴ 70
0
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1
reply
2.6k
views
Comment: C: Plotting chip signal at TSSs with deeptools
6.1 years ago by srhic ▴ 70
2
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4
replies
2.6k
views
Plotting chip signal at TSSs with deeptools
deeptools computematrix ChIP-Seq
updated 13 months ago by ▴ 80 • written 6.1 years ago by ▴ 70
1
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0
replies
4.1k
views
Comment: C: Refseq TSS vs Ensemble TSS
6.1 years ago by srhic ▴ 70
61 results • Page 1 of 2
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