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Showing :
questions
3
votes
5
replies
4.0k
views
Split VCF into separate VCFs by SNP count
vcf
bcftools
next-gen
written 3.2 years ago by
timothy.delory
▴ 20
0
votes
2
replies
855
views
Calculate GQ for samples VCF
freebayes
Linux
VCF
GATK
updated 2.4 years ago by
Pierre Lindenbaum
161k • written 2.4 years ago by
timothy.delory
▴ 20
0
votes
0
replies
823
views
HaplotypeCaller Memory Optimization
calling
GATK
HPC
variant
2.7 years ago by
timothy.delory
▴ 20
0
votes
2
replies
678
views
Combine haploid fastq's into diploid "individuals"
GATK
pop-gen
haplodiploid
2.8 years ago by
timothy.delory
▴ 20
0
votes
2
replies
841
views
Make info tag separate column VCF
vcf
ANGSD
updated 3.0 years ago by
Ram
43k • written 3.0 years ago by
timothy.delory
▴ 20
0
votes
0
replies
612
views
Watterson Estimate VCFs with different coverage
software
vcf
popgen
3.1 years ago by
timothy.delory
▴ 20
0
votes
0
replies
673
views
Artificially high rho outputs from LDHat
rho
VCF
LDHat
popgen
3.2 years ago by
timothy.delory
▴ 20
0
votes
1
reply
1.3k
views
How do I organize snakemake when not all jobs successfully output files from previous rule?
snakemake
workflow
python
3.2 years ago by
timothy.delory
▴ 20
0
votes
0
replies
495
views
Population Genetics WGS: how do I know if I have too few individuals?
wgs
sequencing
next-gen
3.3 years ago by
timothy.delory
▴ 20
3
votes
2
replies
1.5k
views
Understanding Resource Job Allocation
snakemake
slurm
memory
workflow
updated 3.3 years ago by
i.sudbery
19k • written 3.3 years ago by
timothy.delory
▴ 20
0
votes
0
replies
800
views
LD Complete lookup table problem
LD
Pop_Gen
LDhat
3.6 years ago by
timothy.delory
▴ 20
1
vote
3
replies
1.2k
views
GATK AnalyzeCovariates No improvement/Sequencing Bias Removal
GATK
BQSR
3.8 years ago by
timothy.delory
▴ 20
2
votes
3
replies
2.7k
views
Snakemake Error (incorrect wildcard use)
snakemake
software error
4.1 years ago by
timothy.delory
▴ 20
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