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4
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2.0k
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HIV NL4-3 transcriptome fasta
rna-seq CLIP-seq
updated 23 days ago by ▴ 90 • written 5.6 years ago by ▴ 140
0
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1
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11k
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Comment: Comment: HIV : gtf or gff annotation
7 weeks ago by xiaoleiusc ▴ 140
0
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0
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12k
views
Comment: Comment: Adapter content in FASTQ file
6 months ago by xiaoleiusc ▴ 140
0
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1
reply
15k
views
Comment: Comment: Run mutltiple Fastq files on Hisat2
12 months ago by xiaoleiusc ▴ 140
0
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0
replies
8.3k
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Comment: Comment: How to generate sequence length distribution from Fasta file
13 months ago by xiaoleiusc ▴ 140
0
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1
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8.3k
views
Comment: Comment: How to generate sequence length distribution from Fasta file
13 months ago by xiaoleiusc ▴ 140
0
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5
replies
3.2k
views
Is there a way to install Python version 2 on Mac with M3 chips?
NGS Python
updated 16 months ago by ▴ 130 • written 16 months ago by ▴ 140
0
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0
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3.2k
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Answer: Answer: Is there a way to install Python version 2 on Mac with M3 chips?
updated 16 months ago by 154k • written 16 months ago by ▴ 140
0
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2
replies
3.2k
views
Comment: Comment: Is there a way to install Python version 2 on Mac with M3 chips?
16 months ago by xiaoleiusc ▴ 140
0
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1
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3.6k
views
Comment: Comment: GTF file for HIV strain pNL4-3
20 months ago by xiaoleiusc ▴ 140
1
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4
replies
1.3k
views
How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 20 months ago by 9.3k • written 20 months ago by ▴ 140
0
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1
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17k
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Comment: Comment: Repeat masker bed file
20 months ago by xiaoleiusc ▴ 140
0
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1
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1.3k
views
Comment: Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
20 months ago by xiaoleiusc ▴ 140
0
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0
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15k
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Comment: Comment: cutadapt for trimming reads to specific length
20 months ago by xiaoleiusc ▴ 140
0
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0
replies
15k
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Comment: Comment: cutadapt for trimming reads to specific length
20 months ago by xiaoleiusc ▴ 140
0
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0
replies
23k
views
Comment: Comment: Downloading gtf file for RefSeq
22 months ago by xiaoleiusc ▴ 140
1
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0
replies
1.8k
views
Comment: Comment: Error message in Standalone BLAST
22 months ago by xiaoleiusc ▴ 140
0
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0
replies
1.5k
views
Answer: Answer: IGV RNAseq- Splice junction
22 months ago by xiaoleiusc ▴ 140
0
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0
replies
4.4k
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Comment: Comment: "Valid" names for paired-end reads
22 months ago by xiaoleiusc ▴ 140
9
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6
replies
2.5k
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Search a read by its name in a big fastq.gz file
NGS fastq
updated 22 months ago by 45k • written 23 months ago by ▴ 140
0
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0
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2.5k
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Comment: Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
22 months ago by xiaoleiusc ▴ 140
1
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0
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2.5k
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Comment: Comment: Search a read by its name in a big fastq.gz file
22 months ago by xiaoleiusc ▴ 140
0
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0
replies
21k
views
Comment: Comment: Running STAR aligner on paired-end reads as single-end read
22 months ago by xiaoleiusc ▴ 140
0
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1
reply
2.5k
views
Comment: Comment: Search a read by its name in a big fastq.gz file
22 months ago by xiaoleiusc ▴ 140
0
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1
reply
4.7k
views
Comment: Comment: Should I remove Kmers identified in FastQC?
23 months ago by xiaoleiusc ▴ 140
0
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0
replies
4.8k
views
Comment: Comment: Chimeric alignment with minimap2
24 months ago by xiaoleiusc ▴ 140
0
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1
reply
1.8k
views
Comment: Comment: Error message in Standalone BLAST
24 months ago by xiaoleiusc ▴ 140
0
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0
replies
9.5k
views
Comment: Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
24 months ago by xiaoleiusc ▴ 140
0
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0
replies
2.4k
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Comment: Comment: Star alignment - AS and MD tags
24 months ago by xiaoleiusc ▴ 140
0
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2
replies
6.9k
views
Comment: Comment: Is trimming necessary for RNAseq?
2.0 years ago by xiaoleiusc ▴ 140
0
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1
reply
8.8k
views
Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
2.0 years ago by xiaoleiusc ▴ 140
2
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1
reply
1.0k
views
are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 2.3 years ago by ▴ 570 • written 2.3 years ago by ▴ 140
0
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0
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1.0k
views
Comment: Comment: multi-mapping reads settings in Rsubread or Rsubjunc
2.5 years ago by xiaoleiusc ▴ 140
1
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2
replies
1.0k
views
multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
2.5 years ago by xiaoleiusc ▴ 140
1
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0
replies
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.7 years ago by xiaoleiusc ▴ 140
0
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1
reply
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.7 years ago by xiaoleiusc ▴ 140
0
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1
reply
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.2 years ago by xiaoleiusc ▴ 140
0
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0
replies
2.5k
views
Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 3.0 years ago by 45k • written 3.6 years ago by ▴ 140
0
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0
replies
2.1k
views
Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
4.0 years ago by xiaoleiusc ▴ 140
0
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1
reply
2.1k
views
Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
4.0 years ago by xiaoleiusc ▴ 140
1
vote
5
replies
2.1k
views
Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 2.7 years ago by 45k • written 4.0 years ago by ▴ 140
0
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0
replies
7.7k
views
Comment: Comment: How To Join Text Files By A Certain Column (Accession Id)
4.0 years ago by xiaoleiusc ▴ 140
1
vote
1
reply
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
4.0 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
4.0 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
4.0 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
6.9k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
4.0 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
71k
views
Comment: Comment: Insert Size And Fragment Size ?
4.0 years ago by xiaoleiusc ▴ 140
1
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1
reply
2.8k
views
Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
4.0 years ago by xiaoleiusc ▴ 140
0
votes
1
reply
29k
views
Comment: Comment: Check if BAM is derived from pair-end or single-end reads?
4.0 years ago by xiaoleiusc ▴ 140
0
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1
reply
2.8k
views
Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
4.0 years ago by xiaoleiusc ▴ 140
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