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Comment: Comment: GTF file for HIV strain pNL4-3
7 weeks ago by xiaoleiusc ▴ 140
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How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 7 weeks ago by 8.5k • written 8 weeks ago by ▴ 140
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13k
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Comment: Comment: Repeat masker bed file
7 weeks ago by xiaoleiusc ▴ 140
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1
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364
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Comment: Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
7 weeks ago by xiaoleiusc ▴ 140
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0
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11k
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Comment: Comment: cutadapt for trimming reads to specific length
8 weeks ago by xiaoleiusc ▴ 140
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0
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11k
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Comment: Comment: cutadapt for trimming reads to specific length
8 weeks ago by xiaoleiusc ▴ 140
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0
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18k
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Comment: Comment: Downloading gtf file for RefSeq
3 months ago by xiaoleiusc ▴ 140
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834
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Comment: Comment: Error message in Standalone BLAST
3 months ago by xiaoleiusc ▴ 140
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917
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Answer: Answer: IGV RNAseq- Splice junction
4 months ago by xiaoleiusc ▴ 140
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3.3k
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Comment: Comment: "Valid" names for paired-end reads
4 months ago by xiaoleiusc ▴ 140
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6
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768
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Search a read by its name in a big fastq.gz file
NGS fastq
updated 4 months ago by 43k • written 4 months ago by ▴ 140
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1.5k
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Comment: Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
4 months ago by xiaoleiusc ▴ 140
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768
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Comment: Comment: Search a read by its name in a big fastq.gz file
4 months ago by xiaoleiusc ▴ 140
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0
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18k
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Comment: Comment: Running STAR aligner on paired-end reads as single-end read
4 months ago by xiaoleiusc ▴ 140
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1
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768
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Comment: Comment: Search a read by its name in a big fastq.gz file
4 months ago by xiaoleiusc ▴ 140
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1
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3.6k
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Comment: Comment: Should I remove Kmers identified in FastQC?
5 months ago by xiaoleiusc ▴ 140
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0
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3.9k
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Comment: Comment: Chimeric alignment with minimap2
5 months ago by xiaoleiusc ▴ 140
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1
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834
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Comment: Comment: Error message in Standalone BLAST
5 months ago by xiaoleiusc ▴ 140
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7.7k
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Comment: Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
5 months ago by xiaoleiusc ▴ 140
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0
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1.6k
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Comment: Comment: Star alignment - AS and MD tags
5 months ago by xiaoleiusc ▴ 140
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2
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4.3k
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Comment: Comment: Is trimming necessary for RNAseq?
5 months ago by xiaoleiusc ▴ 140
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0
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6.7k
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Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
5 months ago by xiaoleiusc ▴ 140
2
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1
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578
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are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 9 months ago by ▴ 490 • written 9 months ago by ▴ 140
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491
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Comment: Comment: multi-mapping reads settings in Rsubread or Rsubjunc
11 months ago by xiaoleiusc ▴ 140
1
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2
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491
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multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
11 months ago by xiaoleiusc ▴ 140
1
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0
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
14 months ago by xiaoleiusc ▴ 140
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1
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
14 months ago by xiaoleiusc ▴ 140
0
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1
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
20 months ago by xiaoleiusc ▴ 140
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0
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1.8k
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Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 17 months ago by 43k • written 2.0 years ago by ▴ 140
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1.4k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
2.4 years ago by xiaoleiusc ▴ 140
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1
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1.4k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
2.4 years ago by xiaoleiusc ▴ 140
1
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5
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1.4k
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Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 14 months ago by 43k • written 2.4 years ago by ▴ 140
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5.7k
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Comment: Comment: How To Join Text Files By A Certain Column (Accession Id)
2.5 years ago by xiaoleiusc ▴ 140
1
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1
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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4.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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63k
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Comment: Comment: Insert Size And Fragment Size ?
2.5 years ago by xiaoleiusc ▴ 140
1
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1
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1.6k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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25k
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Comment: Comment: Check if BAM is derived from pair-end or single-end reads?
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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1.6k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
2.5 years ago by xiaoleiusc ▴ 140
2
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6
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1.6k
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calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 2.5 years ago by 8.6k • written 2.5 years ago by ▴ 140
1
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0
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557
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Is there a public database where I could download mRNA seq (transcriptome) data of 293T cells
RNA-seq Database Public
2.5 years ago by xiaoleiusc ▴ 140
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0
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13k
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Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
2.5 years ago by xiaoleiusc ▴ 140
0
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1
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13k
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Comment: Comment: How to work out Z score for heatmaps for RNA seq dataset
2.5 years ago by xiaoleiusc ▴ 140
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0
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40k
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Comment: Comment: Why Does Rna-Seq Read Count Fit Poisson Distribution?
2.5 years ago by xiaoleiusc ▴ 140
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0
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4.6k
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Comment: Comment: Forge a BSgenome data package
2.6 years ago by xiaoleiusc ▴ 140
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1
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2.2k
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Comment: Comment: Loading a genome in BSgenome
2.6 years ago by xiaoleiusc ▴ 140
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0
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14k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
2.5 years ago by xiaoleiusc ▴ 140
0
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0
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14k
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Comment: Comment: Script To Calculate Dinucleotide Frequency For Many Sequences
2.6 years ago by xiaoleiusc ▴ 140
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