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11k
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Comment: Comment: HIV : gtf or gff annotation
7 days ago by xiaoleiusc ▴ 140
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0
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12k
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Comment: Comment: Adapter content in FASTQ file
4 months ago by xiaoleiusc ▴ 140
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1
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15k
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Comment: Comment: Run mutltiple Fastq files on Hisat2
11 months ago by xiaoleiusc ▴ 140
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0
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8.1k
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Comment: Comment: How to generate sequence length distribution from Fasta file
12 months ago by xiaoleiusc ▴ 140
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1
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8.1k
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Comment: Comment: How to generate sequence length distribution from Fasta file
12 months ago by xiaoleiusc ▴ 140
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5
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2.9k
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Is there a way to install Python version 2 on Mac with M3 chips?
NGS Python
updated 14 months ago by ▴ 130 • written 14 months ago by ▴ 140
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0
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2.9k
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Answer: Answer: Is there a way to install Python version 2 on Mac with M3 chips?
updated 14 months ago by 153k • written 14 months ago by ▴ 140
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2
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2.9k
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Comment: Comment: Is there a way to install Python version 2 on Mac with M3 chips?
14 months ago by xiaoleiusc ▴ 140
0
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0
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3.1k
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Comment: Comment: GTF file for HIV strain pNL4-3
18 months ago by xiaoleiusc ▴ 140
1
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4
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1.2k
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How can I get the sequences of the first 20nt of introns and the last 250nt of introns of hg38 genome?
annotation RNA
updated 19 months ago by 9.3k • written 19 months ago by ▴ 140
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1
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16k
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Comment: Comment: Repeat masker bed file
19 months ago by xiaoleiusc ▴ 140
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1
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1.2k
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Comment: Comment: How can I get the sequences of the first 20nt of introns and the last 250nt of i
19 months ago by xiaoleiusc ▴ 140
0
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0
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14k
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Comment: Comment: cutadapt for trimming reads to specific length
19 months ago by xiaoleiusc ▴ 140
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0
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14k
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Comment: Comment: cutadapt for trimming reads to specific length
19 months ago by xiaoleiusc ▴ 140
0
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0
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23k
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Comment: Comment: Downloading gtf file for RefSeq
20 months ago by xiaoleiusc ▴ 140
1
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0
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1.7k
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Comment: Comment: Error message in Standalone BLAST
20 months ago by xiaoleiusc ▴ 140
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0
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1.4k
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Answer: Answer: IGV RNAseq- Splice junction
21 months ago by xiaoleiusc ▴ 140
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0
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4.3k
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Comment: Comment: "Valid" names for paired-end reads
21 months ago by xiaoleiusc ▴ 140
9
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6
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2.4k
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Search a read by its name in a big fastq.gz file
NGS fastq
updated 21 months ago by 45k • written 21 months ago by ▴ 140
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0
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2.4k
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Comment: Comment: Bowtie2 end-to-end versus local alignment for small RNAseq
21 months ago by xiaoleiusc ▴ 140
1
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0
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2.4k
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Comment: Comment: Search a read by its name in a big fastq.gz file
21 months ago by xiaoleiusc ▴ 140
0
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0
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21k
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Comment: Comment: Running STAR aligner on paired-end reads as single-end read
21 months ago by xiaoleiusc ▴ 140
0
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1
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2.4k
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Comment: Comment: Search a read by its name in a big fastq.gz file
21 months ago by xiaoleiusc ▴ 140
0
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1
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4.5k
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Comment: Comment: Should I remove Kmers identified in FastQC?
22 months ago by xiaoleiusc ▴ 140
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0
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4.7k
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Comment: Comment: Chimeric alignment with minimap2
22 months ago by xiaoleiusc ▴ 140
0
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1
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1.7k
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Comment: Comment: Error message in Standalone BLAST
22 months ago by xiaoleiusc ▴ 140
0
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0
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9.4k
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Comment: Comment: Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
22 months ago by xiaoleiusc ▴ 140
0
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0
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2.3k
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Comment: Comment: Star alignment - AS and MD tags
22 months ago by xiaoleiusc ▴ 140
0
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2
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6.7k
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Comment: Comment: Is trimming necessary for RNAseq?
22 months ago by xiaoleiusc ▴ 140
0
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1
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8.5k
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Comment: Comment: SE reads in fr-firststrand, fr-secondstrand
22 months ago by xiaoleiusc ▴ 140
2
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1
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955
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are transcripts in the Ensembl transcript release of human from certain cell types?
annotation RNA-seq
updated 2.2 years ago by ▴ 570 • written 2.2 years ago by ▴ 140
0
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0
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952
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Comment: Comment: multi-mapping reads settings in Rsubread or Rsubjunc
2.3 years ago by xiaoleiusc ▴ 140
1
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2
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952
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multi-mapping reads settings in Rsubread or Rsubjunc
Rsubjunc RNA-seq
2.3 years ago by xiaoleiusc ▴ 140
1
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0
replies
6.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.6 years ago by xiaoleiusc ▴ 140
0
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1
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6.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
2.6 years ago by xiaoleiusc ▴ 140
0
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1
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6.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.1 years ago by xiaoleiusc ▴ 140
0
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0
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2.4k
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Answer: Answer: Fastq reads mapped to the desired position on reference genome
updated 2.9 years ago by 45k • written 3.4 years ago by ▴ 140
0
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0
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2.0k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
3.8 years ago by xiaoleiusc ▴ 140
0
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1
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2.0k
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Comment: Comment: Find a human mRNA transcript with specific dinucleotide frequencies close to us
3.8 years ago by xiaoleiusc ▴ 140
1
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5
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2.0k
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Find a human mRNA transcript with specific dinucleotide frequencies close to user input values
Python RNA-seq R
updated 2.6 years ago by 45k • written 3.8 years ago by ▴ 140
0
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0
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7.4k
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Comment: Comment: How To Join Text Files By A Certain Column (Accession Id)
3.9 years ago by xiaoleiusc ▴ 140
1
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1
reply
6.6k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.9 years ago by xiaoleiusc ▴ 140
0
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1
reply
6.6k
views
Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.9 years ago by xiaoleiusc ▴ 140
0
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1
reply
6.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.9 years ago by xiaoleiusc ▴ 140
0
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1
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6.6k
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Comment: Comment: Relative frequencies of the nucleotides in Fasta files
3.9 years ago by xiaoleiusc ▴ 140
0
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1
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70k
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Comment: Comment: Insert Size And Fragment Size ?
3.9 years ago by xiaoleiusc ▴ 140
1
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1
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2.6k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.9 years ago by xiaoleiusc ▴ 140
0
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1
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28k
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Comment: Comment: Check if BAM is derived from pair-end or single-end reads?
3.9 years ago by xiaoleiusc ▴ 140
0
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1
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2.6k
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Comment: Comment: calculate nucleotides frequencies from mapped reads in a BAM file
3.9 years ago by xiaoleiusc ▴ 140
2
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6
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2.6k
views
calculate nucleotides frequencies from mapped reads in a BAM file
RNA-seq
updated 3.9 years ago by 9.0k • written 3.9 years ago by ▴ 140
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