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0
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718
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Comment: Comment: Annotate GFA with coverage depth
5 months ago by elcortegano ▴ 210
0
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2
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718
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Annotate GFA with coverage depth
vg
5 months ago by elcortegano ▴ 210
2
votes
3
replies
5.1k
views
How to run Picard docker image
next-gen alignment docker picard
updated 12 months ago by ▴ 400 • written 6.0 years ago by ▴ 210
0
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0
replies
2.3k
views
Comment: Comment: Filtering a GFF to retain only exons with CDS annotation
3.2 years ago by elcortegano ▴ 210
1
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2
replies
2.3k
views
Filtering a GFF to retain only exons with CDS annotation
gff annotation
3.2 years ago by elcortegano ▴ 210
1
vote
1
reply
2.6k
views
Comment: Comment: Faster alternative to samtools calmd
3.6 years ago by elcortegano ▴ 210
0
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1
reply
2.6k
views
Comment: Comment: Faster alternative to samtools calmd
3.6 years ago by elcortegano ▴ 210
0
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1
reply
2.6k
views
Comment: Comment: Faster alternative to samtools calmd
3.6 years ago by elcortegano ▴ 210
2
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8
replies
2.6k
views
Faster alternative to samtools calmd
alignment BAM MD
updated 3.6 years ago by 8.0k • written 3.6 years ago by ▴ 210
2
votes
0
replies
16k
views
Comment: Comment: find positions of a short sequence in a genome
3.8 years ago by elcortegano ▴ 210
0
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0
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2.4k
views
Comment: Comment: Getting coordinates for a given sequence motif
3.8 years ago by elcortegano ▴ 210
7
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4
replies
2.4k
views
Getting coordinates for a given sequence motif
genome assembly
updated 3.8 years ago by 89k • written 3.8 years ago by ▴ 210
3
votes
1
reply
1.5k
views
Calling TE sequences from VCF files
next-gen variant-calling sniffles
updated 23 months ago by 45k • written 5.8 years ago by ▴ 210
0
votes
2
replies
1.5k
views
Arrow crashes during second iteration
genome polish arrow gcpp
4.6 years ago by elcortegano ▴ 210
0
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0
replies
1.5k
views
Comment: C: Arrow crashes during second iteration
4.6 years ago by elcortegano ▴ 210
1
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1
reply
28k
views
Comment: C: Get intronic and intergenic sequences based on gff file
5.2 years ago by elcortegano ▴ 210
0
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0
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2.6k
views
Answer: A: Syntax Error near unexpected token (
5.3 years ago by elcortegano ▴ 210
0
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0
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3.2k
views
Comment: C: biomart webservice error when using data from Phytozome
5.3 years ago by elcortegano ▴ 210
10
votes
9
replies
3.2k
views
biomart webservice error when using data from Phytozome
R software error
updated 5.3 years ago by ★ 2.1k • written 5.3 years ago by ▴ 210
0
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1
reply
3.2k
views
Comment: C: biomart webservice error when using data from Phytozome
5.3 years ago by elcortegano ▴ 210
0
votes
2
replies
3.2k
views
Comment: C: biomart webservice error when using data from Phytozome
5.3 years ago by elcortegano ▴ 210
4
votes
2
replies
1.9k
views
Compilation error for PAML
software error
updated 3.0 years ago by ▴ 10 • written 5.3 years ago by ▴ 210
0
votes
0
replies
1.1k
views
Distribution of QUAL scores in variant and invatiant sites
next-gen
5.5 years ago by elcortegano ▴ 210
2
votes
0
replies
1.9k
views
Wrong intervals with bedtools makewindows
next-gen bedtools
5.6 years ago by elcortegano ▴ 210
1
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0
replies
1.8k
views
Answer: A: Compute Mapping quality for invariant sites
5.6 years ago by elcortegano ▴ 210
1
vote
3
replies
1.8k
views
Compute Mapping quality for invariant sites
next-gen mapping-quality
5.6 years ago by elcortegano ▴ 210
0
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0
replies
1.8k
views
Comment: C: Compute Mapping quality for invariant sites
5.6 years ago by elcortegano ▴ 210
0
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1
reply
1.2k
views
Comment: C: Estimate distances to closest gene from VCF and GFF files
5.6 years ago by elcortegano ▴ 210
2
votes
3
replies
1.2k
views
Estimate distances to closest gene from VCF and GFF files
next-gen vcf gff
5.6 years ago by elcortegano ▴ 210
8
votes
7
replies
3.8k
views
How to properly measure the length of a reference genome
next-gen genome k-mer
updated 5.7 years ago by 3.1k • written 6.0 years ago by ▴ 210
1
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0
replies
3.8k
views
Answer: A: How to properly measure the length of a reference genome
5.7 years ago by elcortegano ▴ 210
0
votes
0
replies
1.4k
views
What does "Infinity" QUAL values mean in VCF files
next-gen vcf
5.9 years ago by elcortegano ▴ 210
6
votes
11
replies
2.8k
views
Are reads with the same length and position always "duplicates"
next-gen picard
5.9 years ago by elcortegano ▴ 210
0
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0
replies
2.8k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.9 years ago by elcortegano ▴ 210
0
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1
reply
2.8k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.9 years ago by elcortegano ▴ 210
0
votes
1
reply
2.8k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.9 years ago by elcortegano ▴ 210
0
votes
0
replies
2.8k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.9 years ago by elcortegano ▴ 210
0
votes
0
replies
2.8k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.9 years ago by elcortegano ▴ 210
4
votes
0
replies
6.8k
views
Comment: C: Is it possible to run IGV in batch mode without opening the GUI?
6.0 years ago by elcortegano ▴ 210
16
votes
3
replies
6.8k
views
Is it possible to run IGV in batch mode without opening the GUI?
next-gen alignment igv
updated 6.0 years ago by ★ 3.5k • written 6.0 years ago by ▴ 210
11
votes
11
replies
6.5k
views
6 follow
Is it possible to retrieve the original reads from a BAM file?
next-gen bam fastq
updated 6.0 years ago by ▴ 310 • written 6.0 years ago by ▴ 210
3
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1
reply
6.5k
views
Answer: A: Is it possible to retrieve the original reads from a BAM file?
6.0 years ago by elcortegano ▴ 210
0
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1
reply
6.5k
views
Comment: C: Is it possible to retrieve the original reads from a BAM file?
6.0 years ago by elcortegano ▴ 210
0
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0
replies
5.1k
views
Answer: A: How to run Picard docker image
6.0 years ago by elcortegano ▴ 210
0
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0
replies
3.8k
views
Comment: C: How to properly measure the length of a reference genome
6.0 years ago by elcortegano ▴ 210
0
votes
0
replies
3.8k
views
Comment: C: How to properly measure the length of a reference genome
6.0 years ago by elcortegano ▴ 210
1
vote
1
reply
2.0k
views
Any recommendations for improving Base Quality Score Recalibration (BQSR) for non-model organisms?
bqsr next-gen variant-calling
updated 23 months ago by 45k • written 6.0 years ago by ▴ 210
0
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0
replies
3.5k
views
Comment: C: MarkDuplicates: Mates are missing
6.0 years ago by elcortegano ▴ 210
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